{ "type": "genome", "identifier": "GCF_003054775.1", "organism": "Saccharospirillum mangrovi", "title": "Saccharospirillum mangrovi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003054775.1", "bioproject": "PRJNA224116", "biosample": "SAMN08891280", "wgs_master": "QAPE00000000.1", "refseq_category": "na", "taxid": "2161747", "species_taxid": "2161747", "organism_name": "Saccharospirillum mangrovi", "infraspecific_name": "strain=HK-33", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/17", "asm_name": "ASM305477v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_003054775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/054/775/GCF_003054775.1_ASM305477v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3718516", "genome_size_ungapped": "3718077", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "97", "contig_count": "97", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003054775.1-RS_2024_08_01", "annotation_date": "2024-08-01", "total_gene_count": "3493", "protein_coding_gene_count": "3424", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-17", "dateModified": "2018-04-17", "datePublished": "2018-04-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Saccharospirillum mangrovi" ], "sample_taxid": [ "2161747" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Haikou city" ], "sample_host_location_id": [], "data_size": "1.046 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 14.99, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3718516", "Number of Sequences": "97", "Longest Sequences (bp)": "570981", "N50 (bp)": "372154", "Gap Ratio (%)": "0.011806", "GCcontent (%)": "57.3", "Number of CDSs": "3457", "Average Protein Length": "322.2", "Coding Ratio (%)": "89.9", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Saccharospirillum mangrovi", "strain": "strain=HK-33", "accession": "GCA_003054775.1", "taxid": 2161747, "species_taxid": 2161747, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1209, "total_fragments": 1210, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Saccharospirillum mangrovi", "strain": "strain=HK-33", "accession": "GCA_003367315.1", "taxid": 2161747, "species_taxid": 2161747, "relation_to_type": "type", "validated": true, "ani": 99.9975, "matched_fragments": 1209, "total_fragments": 1210, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Saccharospirillum salsuginis", "strain": "strain=KCTC 22169", "accession": "GCA_014651855.1", "taxid": 418750, "species_taxid": 418750, "relation_to_type": "type", "validated": true, "ani": 78.397, "matched_fragments": 418, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharospirillum alexandrii", "strain": "strain=LZ-5", "accession": "GCA_004000275.1", "taxid": 2448477, "species_taxid": 2448477, "relation_to_type": "type", "validated": true, "ani": 77.8805, "matched_fragments": 323, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharospirillum impatiens", "strain": "strain=DSM 12546", "accession": "GCA_000423605.1", "taxid": 169438, "species_taxid": 169438, "relation_to_type": "type", "validated": true, "ani": 77.4943, "matched_fragments": 270, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Reinekea blandensis", "strain": "strain=MED297", "accession": "GCA_000153185.1", "taxid": 374838, "species_taxid": 374838, "relation_to_type": "type", "validated": true, "ani": 76.6629, "matched_fragments": 98, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Reinekea forsetii", "strain": "strain=Hel1_31_D35", "accession": "GCA_002795845.1", "taxid": 1336806, "species_taxid": 1336806, "relation_to_type": "type", "validated": true, "ani": 76.6085, "matched_fragments": 69, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernicola", "strain": "strain=K1S02-6", "accession": "GCA_003596405.1", "taxid": 2320866, "species_taxid": 2320866, "relation_to_type": "type", "validated": true, "ani": 76.4479, "matched_fragments": 97, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 76.3694, "matched_fragments": 126, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 76.1979, "matched_fragments": 72, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 76.196, "matched_fragments": 107, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas baetica", "strain": "strain=LMG 25716", "accession": "GCA_002813455.1", "taxid": 674054, "species_taxid": 674054, "relation_to_type": "type", "validated": true, "ani": 76.1444, "matched_fragments": 90, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas borbori", "strain": "strain=DSM 17834", "accession": "GCA_900115555.1", "taxid": 289003, "species_taxid": 289003, "relation_to_type": "type", "validated": true, "ani": 76.0892, "matched_fragments": 113, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas capeferrum", "strain": "strain=WCS358", "accession": "GCA_022548835.1", "taxid": 1495066, "species_taxid": 1495066, "relation_to_type": "type", 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77.879, "matched_fragments": 322, "total_fragments": 1210, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Natronospirillaceae;g__Saccharospirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000423605.1", "gtdb_species": "s__Saccharospirillum impatiens", "ani": 77.5157, "matched_fragments": 270, "total_fragments": 1210, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Natronospirillaceae;g__Saccharospirillum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014490745.1", "gtdb_species": "s__Pseudomonas_E alcaligenes_C", "ani": 76.6306, 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