{ "type": "genome", "identifier": "GCF_003055625.1", "organism": "Flavobacterium magnum", "title": "Flavobacterium magnum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003055625.1", "bioproject": "PRJNA224116", "biosample": "SAMN08903377", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2162713", "species_taxid": "2162713", "organism_name": "Flavobacterium magnum", "infraspecific_name": "strain=HYN0048", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/18", "asm_name": "ASM305562v1", "asm_submitter": "Korea University", "gbrs_paired_asm": "GCA_003055625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/055/625/GCF_003055625.1_ASM305562v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3464207", "genome_size_ungapped": "3464207", "gc_percent": "47.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003055625.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "2989", "protein_coding_gene_count": "2921", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-18", "dateModified": "2018-04-18", "datePublished": "2018-04-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium magnum" ], "sample_taxid": [ "2162713" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.971 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3464207", "Number of Sequences": "1", "Longest Sequences (bp)": "3464207", "N50 (bp)": "3464207", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.0", "Number of CDSs": "2941", "Average Protein Length": "354.4", "Coding Ratio (%)": "90.3", "Number of rRNAs": "9", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium magnum", "strain": "strain=HYN0048", "accession": "GCA_003055625.1", "taxid": 2162713, "species_taxid": 2162713, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1153, "total_fragments": 1154, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium pallidum", "strain": "strain=HYN0049", "accession": "GCA_003097535.1", "taxid": 2172098, "species_taxid": 2172098, "relation_to_type": "type", "validated": true, "ani": 81.092, "matched_fragments": 746, "total_fragments": 1154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrotolerans", "strain": "strain=RB1R5", "accession": "GCA_003097635.1", "taxid": 2169410, "species_taxid": 2169410, "relation_to_type": "type", "validated": true, "ani": 78.1156, "matched_fragments": 84, "total_fragments": 1154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium humi", "strain": "strain=DS2-A", "accession": "GCA_004745595.1", "taxid": 2562683, "species_taxid": 2562683, "relation_to_type": "type", "validated": true, "ani": 77.7143, "matched_fragments": 114, "total_fragments": 1154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium lotistagni", "strain": "strain=CYK-4", "accession": "GCA_011392125.1", "taxid": 2709660, "species_taxid": 2709660, "relation_to_type": "type", "validated": true, "ani": 77.6826, "matched_fragments": 123, "total_fragments": 1154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium plurextorum", "strain": "strain=CCUG 60112", "accession": "GCA_002217395.1", "taxid": 1114867, "species_taxid": 1114867, "relation_to_type": "type", "validated": true, "ani": 77.5847, "matched_fragments": 63, "total_fragments": 1154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium microcysteis", "strain": "strain=MaA-Y11", "accession": "GCA_006385255.1", "taxid": 2596891, "species_taxid": 2596891, "relation_to_type": "type", "validated": true, "ani": 77.4875, "matched_fragments": 102, "total_fragments": 1154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium silvaticum", "strain": "strain=SE-s28", "accession": "GCA_012911565.1", "taxid": 1852020, "species_taxid": 1852020, "relation_to_type": "type", "validated": true, "ani": 77.4305, "matched_fragments": 92, "total_fragments": 1154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium noncentrifugens", "strain": "strain=CGMCC 1.10076", "accession": "GCA_900100375.1", "taxid": 1128970, "species_taxid": 1128970, "relation_to_type": "type", "validated": true, "ani": 77.2502, "matched_fragments": 186, "total_fragments": 1154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium alvei", "strain": "strain=HR-AY", "accession": "GCA_002920895.1", "taxid": 2080416, "species_taxid": 2080416, "relation_to_type": "type", "validated": true, "ani": 77.2476, "matched_fragments": 70, "total_fragments": 1154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium noncentrifugens", "strain": "strain=NBRC 108844", "accession": "GCA_007992475.1", "taxid": 1128970, "species_taxid": 1128970, "relation_to_type": "type", "validated": true, "ani": 77.2452, "matched_fragments": 188, "total_fragments": 1154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium caeni", "strain": "strain=CGMCC 1.7031", "accession": "GCA_900101895.1", "taxid": 490189, "species_taxid": 490189, "relation_to_type": "type", "validated": true, "ani": 77.186, "matched_fragments": 154, "total_fragments": 1154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xueshanense", "strain": "strain=CGMCC 1.9227", "accession": "GCA_900112975.1", "taxid": 935223, "species_taxid": 935223, "relation_to_type": "type", "validated": true, "ani": 76.798, "matched_fragments": 70, "total_fragments": 1154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sinopsychrotolerans", "strain": "strain=CGMCC 1.8704", "accession": "GCA_900110375.1", "taxid": 604089, "species_taxid": 604089, "relation_to_type": "type", "validated": true, "ani": 76.7325, "matched_fragments": 73, "total_fragments": 1154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium agri", "strain": "strain=MAH-1", "accession": "GCA_013401995.1", "taxid": 2743471, "species_taxid": 2743471, "relation_to_type": "type", "validated": true, "ani": 76.6416, "matched_fragments": 133, "total_fragments": 1154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium coralii", "strain": "strain=D11R37", "accession": "GCA_019891545.1", "taxid": 2838017, "species_taxid": 2838017, "relation_to_type": "type", "validated": true, "ani": 76.4528, "matched_fragments": 68, "total_fragments": 1154, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003055625.1", "gtdb_species": "s__Flavobacterium 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