{ "type": "genome", "identifier": "GCF_003056345.1", "organism": "Devosia submarina", "title": "Devosia submarina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang Wanli University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003056345.1", "bioproject": "PRJNA224116", "biosample": "SAMN08781060", "wgs_master": "PYWB00000000.1", "refseq_category": "reference genome", "taxid": "1173082", "species_taxid": "1173082", "organism_name": "Devosia submarina", "infraspecific_name": "strain=JCM 18935", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/18", "asm_name": "ASM305634v1", "asm_submitter": "Zhejiang Wanli University", "gbrs_paired_asm": "GCA_003056345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/056/345/GCF_003056345.1_ASM305634v1", "excluded_from_refseq": "na", 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Japan" ], "sample_host_location_id": [], "data_size": "1.122 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3980379", "Number of Sequences": "45", "Longest Sequences (bp)": "570501", "N50 (bp)": "328865", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.4", "Number of CDSs": "3874", "Average Protein Length": "301.1", "Coding Ratio (%)": "87.9", "Number of rRNAs": "2", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Devosia submarina", "strain": "strain=JCM 18935", "accession": "GCA_003056345.1", "taxid": 1173082, "species_taxid": 1173082, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1305, "total_fragments": 1308, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Devosia naphthalenivorans", "strain": "strain=CM5-1", "accession": "GCA_003056355.1", "taxid": 2082392, "species_taxid": 2082392, "relation_to_type": "type", "validated": true, "ani": 82.0612, "matched_fragments": 769, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia ginsengisoli", "strain": "strain=Gsoil 520", "accession": "GCA_007859655.1", "taxid": 400770, "species_taxid": 400770, "relation_to_type": "type", "validated": true, "ani": 80.2423, "matched_fragments": 659, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia beringensis", "strain": "strain=S02", "accession": "GCA_014926585.1", "taxid": 2657486, "species_taxid": 2657486, "relation_to_type": "type", "validated": true, "ani": 79.957, "matched_fragments": 624, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia oryziradicis", "strain": "strain=G19", "accession": "GCA_016698645.1", "taxid": 2801335, "species_taxid": 2801335, "relation_to_type": "type", "validated": true, "ani": 79.951, "matched_fragments": 598, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia limi", "strain": "strain=DSM 17137", "accession": "GCA_000970435.1", "taxid": 288995, "species_taxid": 288995, "relation_to_type": "type", "validated": true, "ani": 79.571, "matched_fragments": 543, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia limi", "strain": "strain=DSM 17137", "accession": "GCA_900128975.1", "taxid": 288995, "species_taxid": 288995, "relation_to_type": "type", "validated": true, "ani": 79.5373, "matched_fragments": 558, "total_fragments": 1308, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Devosia psychrophila", "strain": "strain=CGMCC 1.10210", "accession": "GCA_900112505.1", 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