{ "type": "genome", "identifier": "GCF_003063475.1", "organism": "Limnohabitans curvus", "title": "Limnohabitans curvus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biology Centre CAS", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003063475.1", "bioproject": "PRJNA224116", "biosample": "SAMN06661508", "wgs_master": "NESP00000000.1", "refseq_category": "reference genome", "taxid": "323423", "species_taxid": "323423", "organism_name": "Limnohabitans curvus", "infraspecific_name": "strain=MWH-C5", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/23", "asm_name": "ASM306347v1", "asm_submitter": "Biology Centre CAS", "gbrs_paired_asm": "GCA_003063475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/063/475/GCF_003063475.1_ASM306347v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3029942", "genome_size_ungapped": "3029942", "gc_percent": "56.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003063475.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "2999", "protein_coding_gene_count": "2916", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-23", "dateModified": "2018-04-23", "datePublished": "2018-04-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Limnohabitans curvus" ], "sample_taxid": [ "323423" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Austria: Lake Mondsee" ], "sample_host_location_id": [], "data_size": "0.849 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3029942", "Number of Sequences": "2", "Longest Sequences (bp)": "2870433", "N50 (bp)": "2870433", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.9", "Number of CDSs": "2972", "Average Protein Length": "311.0", "Coding Ratio (%)": "91.5", "Number of rRNAs": "6", "Number of tRNAs": "42", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limnohabitans curvus", "strain": "strain=MWH-C5", "accession": "GCA_003063475.1", "taxid": 323423, "species_taxid": 323423, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1007, "total_fragments": 1009, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 79.6525, "matched_fragments": 357, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans parvus", "strain": "strain=II-B4", "accession": "GCA_003063455.1", "taxid": 540061, "species_taxid": 540061, "relation_to_type": "type", "validated": true, "ani": 79.5721, "matched_fragments": 365, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans planktonicus", "strain": "strain=II-D5", "accession": "GCA_001270065.2", "taxid": 540060, "species_taxid": 540060, "relation_to_type": "type", "validated": true, "ani": 79.3068, "matched_fragments": 354, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas fluminis", "strain": "strain=CJ34", "accession": "GCA_019186805.1", "taxid": 2796366, "species_taxid": 2796366, "relation_to_type": "type", "validated": true, "ani": 78.2283, "matched_fragments": 214, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter lanceolatus", "strain": "strain=ATCC 14669", "accession": "GCA_000381265.1", "taxid": 86182, "species_taxid": 86182, "relation_to_type": "type", "validated": true, "ani": 78.0282, "matched_fragments": 285, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax lacus", "strain": "strain=IMCC26218", "accession": "GCA_003415675.1", "taxid": 2184758, "species_taxid": 2184758, "relation_to_type": "type", "validated": true, "ani": 77.944, "matched_fragments": 296, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curvibacter gracilis", "strain": "strain=ATCC BAA-807", "accession": "GCA_000518645.1", "taxid": 230310, "species_taxid": 230310, "relation_to_type": "type", "validated": true, "ani": 77.8442, "matched_fragments": 291, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax aquaticus", "strain": "strain=Gr-4", "accession": "GCA_006974105.1", "taxid": 2527691, "species_taxid": 2527691, "relation_to_type": "type", "validated": true, "ani": 77.8119, "matched_fragments": 234, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga pseudoflava", "strain": "strain=NBRC 102511", "accession": "GCA_001592285.1", "taxid": 47421, "species_taxid": 47421, "relation_to_type": "type", "validated": true, "ani": 77.6751, "matched_fragments": 224, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas aquatica", "strain": "strain=NBRC 14918", "accession": "GCA_000739875.1", "taxid": 225991, "species_taxid": 225991, 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77.4277, "matched_fragments": 252, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoferax antarcticus", "strain": "strain=DSM 24876", "accession": "GCA_001955735.1", "taxid": 81479, "species_taxid": 81479, "relation_to_type": "type", "validated": true, "ani": 77.4048, "matched_fragments": 210, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ottowia testudinis", "strain": "strain=27C", "accession": "GCA_017498525.1", "taxid": 2816950, "species_taxid": 2816950, "relation_to_type": "type", "validated": true, "ani": 77.349, "matched_fragments": 211, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira suum", "strain": "strain=SC1-8", "accession": "GCA_003008595.1", "taxid": 2109915, "species_taxid": 2109915, "relation_to_type": "type", "validated": true, "ani": 77.2846, "matched_fragments": 203, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ottowia beijingensis", "strain": "strain=GCS-AN-3", "accession": "GCA_013423955.1", "taxid": 1207057, "species_taxid": 1207057, "relation_to_type": "type", "validated": true, "ani": 77.2462, "matched_fragments": 198, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas terrae", "strain": "strain=NBRC 106524", "accession": "GCA_001544075.1", "taxid": 673548, "species_taxid": 673548, "relation_to_type": "type", "validated": true, "ani": 77.2394, "matched_fragments": 220, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira hankyongi", "strain": "strain=NY-02", "accession": "GCA_003570885.1", "taxid": 2315688, "species_taxid": 2315688, "relation_to_type": "type", "validated": true, "ani": 77.2096, "matched_fragments": 208, "total_fragments": 1009, "ani_threshold": 95, "status": "below_threshold" }, { 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