{ "type": "genome", "identifier": "GCF_003063625.1", "organism": "Saccharobesus litoralis", "title": "Saccharobesus litoralis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University Sains Malaysia", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003063625.1", "bioproject": "PRJNA224116", "biosample": "SAMN08394866", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2172099", "species_taxid": "2172099", "organism_name": "Saccharobesus litoralis", "infraspecific_name": "strain=CCB-QB4", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/23", "asm_name": "ASM306362v1", "asm_submitter": "University Sains Malaysia", "gbrs_paired_asm": "GCA_003063625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/063/625/GCF_003063625.1_ASM306362v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5871129", "genome_size_ungapped": "5871129", "gc_percent": "41.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003063625.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4452", "protein_coding_gene_count": "4338", "non_coding_gene_count": "87", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-23", "dateModified": "2018-04-23", "datePublished": "2018-04-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Saccharobesus litoralis" ], "sample_taxid": [ "2172099" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Malaysia: Penang" ], "sample_host_location_id": [], "data_size": "1.654 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5871129", "Number of Sequences": "2", "Longest Sequences (bp)": "5663044", "N50 (bp)": "5663044", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.3", "Number of CDSs": "4404", "Average Protein Length": "381.9", "Coding Ratio (%)": "85.9", "Number of rRNAs": "21", "Number of tRNAs": "62", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Saccharobesus litoralis", "strain": "strain=CCB-QB4", "accession": "GCA_003063625.1", "taxid": 2172099, "species_taxid": 2172099, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1952, "total_fragments": 1956, 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"strain=YM01", "accession": "GCA_000281085.1", "taxid": 1172192, "species_taxid": 1172192, "relation_to_type": "type", "validated": true, "ani": 78.0126, "matched_fragments": 181, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas rubra", "strain": "strain=DSM 6842", "accession": "GCA_000238295.4", "taxid": 43658, "species_taxid": 43658, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7522, "matched_fragments": 52, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas prydzensis", "strain": "strain=ACAM 620", "accession": "GCA_014925355.1", "taxid": 182141, "species_taxid": 182141, "relation_to_type": "type", "validated": true, "ani": 77.7316, "matched_fragments": 90, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catenovulum maritimum", "strain": "strain=Q1", "accession": "GCA_001050375.1", 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