{ "type": "genome", "identifier": "GCF_003065425.1", "organism": "Mycetocola zhujimingii", "title": "Mycetocola zhujimingii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese center for disease control and prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003065425.1", "bioproject": "PRJNA224116", "biosample": "SAMN08388711", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2079792", "species_taxid": "2079792", "organism_name": "Mycetocola zhujimingii", "infraspecific_name": "strain=CGMCC 1.16372", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/23", "asm_name": "ASM306542v1", "asm_submitter": "Chinese center for disease control and prevention", "gbrs_paired_asm": "GCA_003065425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/065/425/GCF_003065425.1_ASM306542v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3193647", "genome_size_ungapped": "3193647", "gc_percent": "65.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-05", "total_gene_count": "3063", "protein_coding_gene_count": "2992", "non_coding_gene_count": "59", "pubmed_id": "30762515" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-23", "dateModified": "2018-04-23", "datePublished": "2018-04-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycetocola zhujimingii" ], "sample_taxid": [ "2079792" ], "sample_host_organism": [ "Tibetan antelope" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Qinghai province" ], "sample_host_location_id": [], "data_size": "0.884 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3193647", "Number of Sequences": "2", "Longest Sequences (bp)": "3161403", "N50 (bp)": "3161403", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.9", "Number of CDSs": "3057", "Average Protein Length": "314.3", "Coding Ratio (%)": "90.2", "Number of rRNAs": "9", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycetocola zhujimingii", "strain": "strain=449 = CGMCC 1.16372", 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699879, "species_taxid": 699879, "relation_to_type": "type", "validated": true, "ani": 80.7881, "matched_fragments": 526, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycetocola miduiensis", "strain": "strain=CGMCC 1.11101", "accession": "GCA_900115155.1", "taxid": 995034, "species_taxid": 995034, "relation_to_type": "type", "validated": true, "ani": 80.7773, "matched_fragments": 487, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycetocola manganoxydans", "strain": "strain=KCTC 19753", "accession": "GCA_014651755.1", "taxid": 699879, "species_taxid": 699879, "relation_to_type": "type", "validated": true, "ani": 80.7193, "matched_fragments": 534, "total_fragments": 1063, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. tessellarius", "strain": "strain=ATCC 33566", "accession": "GCA_002240635.1", "taxid": 31965, "species_taxid": 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