{ "type": "genome", "identifier": "GCF_003070865.1", "organism": "Corynebacterium liangguodongii", "title": "Corynebacterium liangguodongii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese center for disease control and prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003070865.1", "bioproject": "PRJNA224116", "biosample": "SAMN08388739", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2079535", "species_taxid": "2079535", "organism_name": "Corynebacterium liangguodongii", "infraspecific_name": "strain=2184", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/24", "asm_name": "ASM307086v1", "asm_submitter": "Chinese center for disease control and prevention", "gbrs_paired_asm": "GCA_003070865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/070/865/GCF_003070865.1_ASM307086v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2357924", "genome_size_ungapped": "2357924", "gc_percent": "66.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003070865.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "2269", "protein_coding_gene_count": "2173", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-24", "dateModified": "2018-04-24", "datePublished": "2018-04-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium" ], "sample_taxid": [ "1716" ], "sample_host_organism": [ "Tibetan antelope" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Qinghai province" ], "sample_host_location_id": [], "data_size": "0.652 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2357924", "Number of Sequences": "1", "Longest Sequences (bp)": "2357924", "N50 (bp)": "2357924", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.1", "Number of CDSs": "2260", "Average Protein Length": "314.7", "Coding Ratio (%)": "90.5", "Number of rRNAs": "12", "Number of tRNAs": "55", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium liangguodongii", "strain": "strain=2184", "accession": "GCA_003070865.1", "taxid": 2079535, "species_taxid": 2079535, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 785, "total_fragments": 785, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium sanguinis", "strain": "strain=CCUG 58655", "accession": "GCA_007641235.1", "taxid": 2594913, "species_taxid": 2594913, "relation_to_type": "type", "validated": true, "ani": 81.7678, "matched_fragments": 538, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium mycetoides", "strain": "strain=DSM 20632", "accession": "GCA_900103625.1", "taxid": 38302, "species_taxid": 38302, "relation_to_type": "type", "validated": true, "ani": 81.5875, "matched_fragments": 495, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium lipophiloflavum", "strain": "strain=DSM 44291", "accession": "GCA_000159635.1", "taxid": 161889, "species_taxid": 161889, "relation_to_type": "type", "validated": true, "ani": 81.4049, "matched_fragments": 491, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium senegalense", "strain": "strain=Marseille-P4329", "accession": "GCA_900411315.1", "taxid": 2080750, "species_taxid": 2080750, "relation_to_type": "type", "validated": true, "ani": 81.3657, "matched_fragments": 485, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium qintianiae", "strain": "strain=MC1420", "accession": "GCA_011038645.2", "taxid": 2709392, "species_taxid": 2709392, "relation_to_type": "type", "validated": true, "ani": 81.0201, "matched_fragments": 476, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium timonense", "strain": "strain=DSM 45434", "accession": "GCA_900105305.1", "taxid": 441500, "species_taxid": 441500, "relation_to_type": "type", "validated": true, "ani": 80.5208, "matched_fragments": 443, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium timonense", "strain": "strain=5401744", "accession": "GCA_000312345.1", "taxid": 441500, "species_taxid": 441500, "relation_to_type": "type", "validated": true, "ani": 80.3913, "matched_fragments": 449, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium jeddahense", "strain": "strain=JCB", "accession": "GCA_000577555.1", "taxid": 1414719, "species_taxid": 1414719, "relation_to_type": "type", "validated": true, "ani": 80.2473, "matched_fragments": 384, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium afermentans subsp. lipophilum", "strain": "strain=CCUG 32105", "accession": "GCA_015351335.1", "taxid": 144184, "species_taxid": 38286, "relation_to_type": "type", "validated": true, "ani": 79.9296, "matched_fragments": 347, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium ihumii", "strain": "strain=GD7", "accession": "GCA_000403725.2", "taxid": 1232427, "species_taxid": 1232427, "relation_to_type": "type", "validated": true, "ani": 79.8475, "matched_fragments": 352, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium ureicelerivorans", "strain": "strain=IMMIB RIV-2301", "accession": "GCA_000747315.1", "taxid": 401472, "species_taxid": 401472, "relation_to_type": "type", "validated": true, "ani": 79.5843, "matched_fragments": 335, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium mucifaciens", "strain": "strain=ATCC 700355", "accession": "GCA_012396315.1", "taxid": 57171, "species_taxid": 57171, "relation_to_type": "type", "validated": true, "ani": 79.5717, "matched_fragments": 324, "total_fragments": 785, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003070865.1", "gtdb_species": "s__Corynebacterium liangguodongii", "ani": 100.0, "matched_fragments": 785, "total_fragments": 785, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_007641235.1", "gtdb_species": "s__Corynebacterium sanguinis", "ani": 81.8019, "matched_fragments": 540, "total_fragments": 785, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "97.90", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_900103625.1", "gtdb_species": "s__Corynebacterium mycetoides", "ani": 81.6186, "matched_fragments": 496, "total_fragments": 785, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000159635.1", "gtdb_species": "s__Corynebacterium lipophiloflavum", "ani": 81.4332, "matched_fragments": 489, "total_fragments": 785, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900411315.1", "gtdb_species": "s__Corynebacterium senegalense", "ani": 81.3376, "matched_fragments": 487, "total_fragments": 785, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011038645.2", "gtdb_species": "s__Corynebacterium qintianiae", "ani": 80.988, "matched_fragments": 477, "total_fragments": 785, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.90", "min_intra_species_ani": 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