{ "type": "genome", "identifier": "GCF_003071345.1", "organism": "Chitinophaga parva", "title": "Chitinophaga parva", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nanjing Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003071345.1", "bioproject": "PRJNA224116", "biosample": "SAMN08932952", "wgs_master": "QCYK00000000.1", "refseq_category": "reference genome", "taxid": "2169414", "species_taxid": "2169414", "organism_name": "Chitinophaga parva", "infraspecific_name": "strain=LY-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/25", "asm_name": "ASM307134v1", "asm_submitter": "Nanjing Agricultural University", "gbrs_paired_asm": "GCA_003071345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/071/345/GCF_003071345.1_ASM307134v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6146060", "genome_size_ungapped": "6146060", "gc_percent": "52.000000", "replicon_count": "0", "scaffold_count": "11", "contig_count": "11", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003071345.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "5024", "protein_coding_gene_count": "4946", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-25", "dateModified": "2018-04-25", "datePublished": "2018-04-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Chitinophaga parva" ], "sample_taxid": [ "2169414" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Anhui" ], "sample_host_location_id": [], "data_size": "1.736 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6146060", "Number of Sequences": "11", "Longest Sequences (bp)": "2428333", "N50 (bp)": "2252767", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.2", "Number of CDSs": "4961", "Average Protein Length": "362.1", "Coding Ratio (%)": "87.7", "Number of rRNAs": "5", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chitinophaga parva", "strain": "strain=LY-1", "accession": "GCA_003071345.1", "taxid": 2169414, "species_taxid": 2169414, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2044, "total_fragments": 2044, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chitinophaga costaii", "strain": "strain=A37T2", "accession": "GCA_003071385.1", "taxid": 1335309, "species_taxid": 1335309, "relation_to_type": "type", "validated": true, "ani": 79.8397, "matched_fragments": 813, "total_fragments": 2044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga costaii", "strain": "strain=A37T2", "accession": "GCA_900094705.1", "taxid": 1335309, "species_taxid": 1335309, "relation_to_type": "type", "validated": true, "ani": 79.8001, "matched_fragments": 822, "total_fragments": 2044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga japonensis", "strain": "strain=DSM 13484", "accession": "GCA_007830125.1", "taxid": 104662, "species_taxid": 104662, "relation_to_type": "type", "validated": true, "ani": 77.5387, "matched_fragments": 423, "total_fragments": 2044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga alhagiae", "strain": "strain=T22", "accession": "GCA_003177275.1", "taxid": 2203219, "species_taxid": 2203219, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4881, "matched_fragments": 202, "total_fragments": 2044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga lutea", "strain": "strain=ZY74", "accession": "GCA_003813775.1", "taxid": 2488634, "species_taxid": 2488634, "relation_to_type": "type", "validated": true, "ani": 77.4084, "matched_fragments": 297, "total_fragments": 2044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga oryzae", "strain": "strain=1303", "accession": "GCA_012516375.2", "taxid": 2725414, "species_taxid": 2725414, "relation_to_type": "type", "validated": true, "ani": 77.3178, "matched_fragments": 345, "total_fragments": 2044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga agrisoli", "strain": "strain=BN140078", "accession": "GCA_008386695.1", 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