{ "type": "genome", "identifier": "GCF_003072645.1", "organism": "Dongshaea marina", "title": "Dongshaea marina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Taiwan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003072645.1", "bioproject": "PRJNA224116", "biosample": "SAMN08931231", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2047966", "species_taxid": "2047966", "organism_name": "Dongshaea marina", "infraspecific_name": "strain=DM2", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/26", "asm_name": "ASM307264v1", "asm_submitter": "National Taiwan University", "gbrs_paired_asm": "GCA_003072645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/072/645/GCF_003072645.1_ASM307264v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5112152", "genome_size_ungapped": "5112152", "gc_percent": "51.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003072645.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4916", "protein_coding_gene_count": "4502", "non_coding_gene_count": "148", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-26", "dateModified": "2018-04-26", "datePublished": "2018-04-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Dongshaea marina" ], "sample_taxid": [ "2047966" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.448 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5112152", "Number of Sequences": "2", "Longest Sequences (bp)": "5032832", "N50 (bp)": "5032832", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.0", "Number of CDSs": "4996", "Average Protein Length": "281.6", "Coding Ratio (%)": "82.6", "Number of rRNAs": "32", "Number of tRNAs": "111", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dongshaea marina", "strain": "strain=DM2", "accession": "GCA_003072645.1", "taxid": 2047966, "species_taxid": 2047966, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1703, "total_fragments": 1703, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Serratia entomophila", "strain": "strain=A1", "accession": "GCA_021462285.1", "taxid": 42906, "species_taxid": 42906, "relation_to_type": "type", "validated": true, "ani": 79.1402, "matched_fragments": 59, "total_fragments": 1703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas encheleia", "strain": "strain=NCTC12917", "accession": "GCA_900637545.1", "taxid": 73010, "species_taxid": 73010, "relation_to_type": "type", "validated": true, "ani": 78.7561, "matched_fragments": 103, "total_fragments": 1703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas salmonicida", "strain": "strain=NCTC12959", "accession": "GCA_900445115.1", "taxid": 645, "species_taxid": 645, "relation_to_type": "type", "validated": true, "ani": 78.4301, "matched_fragments": 105, "total_fragments": 1703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas jandaei", "strain": 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}, { "organism_name": "Aeromonas jandaei", "strain": "strain=CECT 4228", "accession": "GCA_000819955.1", "taxid": 650, "species_taxid": 650, "relation_to_type": "type", "validated": true, "ani": 76.5359, "matched_fragments": 111, "total_fragments": 1703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellella denitrificans", "strain": "strain=ZD1", "accession": "GCA_002237365.1", "taxid": 347534, "species_taxid": 347534, "relation_to_type": "type", "validated": true, "ani": 76.535, "matched_fragments": 76, "total_fragments": 1703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas schubertii", "strain": "strain=ATCC 43700", "accession": "GCA_001481395.1", "taxid": 652, "species_taxid": 652, "relation_to_type": "type", "validated": true, "ani": 76.5021, "matched_fragments": 105, "total_fragments": 1703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferrimonas sediminicola", "strain": "strain=IMCC35001", 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