{ "type": "genome", "identifier": "GCF_003076135.1", "organism": "Nocardioides gansuensis", "title": "Nocardioides gansuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Huazhong Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003076135.1", "bioproject": "PRJNA224116", "biosample": "SAMN08969274", "wgs_master": "QDGZ00000000.1", "refseq_category": "reference genome", "taxid": "2138300", "species_taxid": "2138300", "organism_name": "Nocardioides gansuensis", "infraspecific_name": "strain=WSJ-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/04/30", "asm_name": "ASM307613v1", "asm_submitter": "Huazhong Agricultural University", "gbrs_paired_asm": "GCA_003076135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/076/135/GCF_003076135.1_ASM307613v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4766031", "genome_size_ungapped": "4766031", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "48", "contig_count": "48", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003076135.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "4559", "protein_coding_gene_count": "4466", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-04-30", "dateModified": "2018-04-30", "datePublished": "2018-04-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides gansuensis" ], "sample_taxid": [ "2138300" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Gansu" ], "sample_host_location_id": [], "data_size": "1.275 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4766031", "Number of Sequences": "48", "Longest Sequences (bp)": "905969", "N50 (bp)": "487185", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.9", "Number of CDSs": "4513", "Average Protein Length": "320.5", "Coding Ratio (%)": "91.0", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides gansuensis", "strain": "strain=WSJ-1", "accession": "GCA_003076135.1", "taxid": 2138300, "species_taxid": 2138300, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1572, "total_fragments": 1573, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardioides sediminis", "strain": "strain=KCTC 19271", "accession": "GCA_003047295.1", "taxid": 433648, "species_taxid": 433648, "relation_to_type": "type", "validated": true, "ani": 82.1831, "matched_fragments": 772, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides terrigena", "strain": "strain=KCTC 19217", "accession": "GCA_003047265.1", "taxid": 424797, "species_taxid": 424797, "relation_to_type": "type", "validated": true, "ani": 82.1326, "matched_fragments": 786, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides allogilvus", "strain": "strain=KCTC 49020", "accession": "GCA_003047285.1", "taxid": 2072017, "species_taxid": 2072017, "relation_to_type": "type", "validated": true, "ani": 82.0546, "matched_fragments": 755, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides currus", "strain": "strain=IB-3", "accession": "GCA_003057875.1", "taxid": 2133958, "species_taxid": 2133958, "relation_to_type": "type", "validated": true, "ani": 81.9906, "matched_fragments": 777, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 81.8697, "matched_fragments": 754, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 81.8078, "matched_fragments": 691, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides flavus Wang et al. 2016", "strain": "strain=CGMCC 1.12791", "accession": "GCA_014653115.1", "taxid": 2058780, "species_taxid": 2058780, "relation_to_type": "type", "validated": true, "ani": 81.7978, "matched_fragments": 715, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ganghwensis", "strain": "strain=9920", "accession": "GCA_014779655.1", "taxid": 252230, "species_taxid": 252230, "relation_to_type": "type", "validated": true, "ani": 81.7871, "matched_fragments": 762, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 81.7567, "matched_fragments": 743, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides cavernae", "strain": "strain=DSM 29950", "accession": "GCA_016907475.1", "taxid": 1921566, "species_taxid": 1921566, "relation_to_type": "type", "validated": true, "ani": 81.6012, "matched_fragments": 761, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides baculatus", "strain": "strain=G10", "accession": "GCA_016735675.1", "taxid": 2801337, "species_taxid": 2801337, "relation_to_type": "type", "validated": true, "ani": 81.5627, "matched_fragments": 746, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ginsengisegetis", "strain": "strain=DSM 21349", "accession": "GCA_014138045.1", "taxid": 661491, "species_taxid": 661491, "relation_to_type": "type", "validated": true, "ani": 81.5144, "matched_fragments": 705, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides exalbidus", "strain": "strain=DSM 22017", "accession": "GCA_900105585.1", "taxid": 402596, "species_taxid": 402596, "relation_to_type": "type", "validated": true, "ani": 81.5046, "matched_fragments": 759, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides cavernae", "strain": "strain=KCTC 39551", "accession": "GCA_014779675.1", "taxid": 1921566, "species_taxid": 1921566, "relation_to_type": "type", "validated": true, "ani": 81.4754, "matched_fragments": 761, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides seonyuensis", "strain": "strain=MMS17-SY207-3", "accession": "GCA_004683965.1", "taxid": 2518371, "species_taxid": 2518371, "relation_to_type": "type", "validated": true, "ani": 81.2778, "matched_fragments": 649, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides hwasunensis", "strain": "strain=19197", "accession": "GCA_014779665.1", "taxid": 397258, "species_taxid": 397258, "relation_to_type": "type", "validated": true, "ani": 81.26, "matched_fragments": 741, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides luti", "strain": "strain=KIGAM211", "accession": "GCA_014212315.1", "taxid": 2761101, "species_taxid": 2761101, "relation_to_type": "type", "validated": true, "ani": 81.0237, "matched_fragments": 699, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_015070765.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 80.9465, "matched_fragments": 684, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_015339545.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 80.9395, "matched_fragments": 688, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013409965.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 80.9322, "matched_fragments": 685, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_900101465.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 80.6427, "matched_fragments": 721, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_013409225.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 80.5746, "matched_fragments": 739, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides humilatus", "strain": "strain=BN130099", "accession": "GCA_008373755.1", "taxid": 2607660, "species_taxid": 2607660, "relation_to_type": "type", "validated": true, "ani": 80.1012, "matched_fragments": 579, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 79.6319, "matched_fragments": 619, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides acrostichi", "strain": "strain=CBS4Y-1", "accession": "GCA_015319165.1", "taxid": 2784339, "species_taxid": 2784339, "relation_to_type": "type", "validated": true, "ani": 79.4131, "matched_fragments": 589, "total_fragments": 1573, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003076135.1", "gtdb_species": "s__Nocardioides gansuensis", "ani": 100.0, "matched_fragments": 1572, "total_fragments": 1573, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001429625.1", "gtdb_species": "s__Nocardioides sp001429625", "ani": 82.2478, "matched_fragments": 787, "total_fragments": 1573, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003047295.1", "gtdb_species": "s__Nocardioides sediminis", "ani": 82.1805, "matched_fragments": 771, "total_fragments": 1573, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003047265.1", "gtdb_species": "s__Nocardioides terrigena", "ani": 82.1152, "matched_fragments": 787, "total_fragments": 1573, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.44", "min_intra_species_ani": 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