{ "type": "genome", "identifier": "GCF_003076455.1", "organism": "Flavobacterium faecale", "title": "Flavobacterium faecale", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ajou University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003076455.1", "bioproject": "PRJNA224116", "biosample": "SAMN06819498", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1355330", "species_taxid": "1355330", "organism_name": "Flavobacterium faecale", "infraspecific_name": "strain=WV33", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/01", "asm_name": "ASM307645v1", "asm_submitter": "Ajou University", "gbrs_paired_asm": "GCA_003076455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/076/455/GCF_003076455.1_ASM307645v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4621116", "genome_size_ungapped": "4621116", "gc_percent": "35.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003076455.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3810", "protein_coding_gene_count": "3700", "non_coding_gene_count": "87", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-01", "dateModified": "2018-05-01", "datePublished": "2018-05-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium faecale" ], "sample_taxid": [ "1355330" ], "sample_host_organism": [ "penguin" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "1.290 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4621116", "Number of Sequences": "1", "Longest Sequences (bp)": "4621116", "N50 (bp)": "4621116", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.2", "Number of CDSs": "3733", "Average Protein Length": "350.6", "Coding Ratio (%)": "85.0", "Number of rRNAs": "18", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium faecale", "strain": "strain=WV33", "accession": "GCA_003076455.1", "taxid": 1355330, "species_taxid": 1355330, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1538, "total_fragments": 1540, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium frigidarium", "strain": "strain=DSM 17623", "accession": "GCA_000425505.1", "taxid": 99286, "species_taxid": 99286, "relation_to_type": "type", "validated": true, "ani": 79.688, "matched_fragments": 399, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium frigoris", "strain": "strain=DSM 15719", "accession": "GCA_900111075.1", "taxid": 229204, "species_taxid": 229204, "relation_to_type": "type", "validated": true, "ani": 79.6077, "matched_fragments": 369, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gillisiae", "strain": "strain=DSM 22376", "accession": "GCA_900107635.1", "taxid": 150146, "species_taxid": 150146, "relation_to_type": "type", "validated": true, "ani": 79.5208, "matched_fragments": 412, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium muglaense", "strain": "strain=F-60", "accession": "GCA_014305155.1", "taxid": 2764716, "species_taxid": 2764716, "relation_to_type": "type", "validated": true, "ani": 79.4681, "matched_fragments": 428, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium undicola", "strain": "strain=BBQ-18", "accession": "GCA_009909155.2", "taxid": 1932779, "species_taxid": 1932779, "relation_to_type": "type", "validated": true, "ani": 79.2853, "matched_fragments": 360, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium kayseriense", "strain": "strain=F-47", "accession": "GCA_014305095.1", "taxid": 2764714, "species_taxid": 2764714, "relation_to_type": "type", "validated": true, "ani": 79.1311, "matched_fragments": 355, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sufflavum", "strain": "strain=BBQ-12", "accession": "GCA_004016525.1", "taxid": 1921138, "species_taxid": 1921138, "relation_to_type": "type", "validated": true, "ani": 79.0533, "matched_fragments": 346, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium weaverense", "strain": "strain=DSM 19727", "accession": "GCA_003688495.1", "taxid": 271156, "species_taxid": 271156, "relation_to_type": "type", "validated": true, "ani": 79.0175, "matched_fragments": 295, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium seoulense", "strain": "strain=EM1321", "accession": "GCA_000695795.1", "taxid": 1492738, "species_taxid": 1492738, "relation_to_type": "type", "validated": true, "ani": 78.9567, "matched_fragments": 334, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flabelliforme", "strain": "strain=P4023", "accession": "GCA_017948675.1", "taxid": 2816119, "species_taxid": 2816119, "relation_to_type": "type", "validated": true, "ani": 78.9553, "matched_fragments": 331, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xinjiangense", "strain": "strain=CGMCC 1.2749", "accession": "GCA_900142885.1", "taxid": 178356, "species_taxid": 178356, "relation_to_type": "type", "validated": true, "ani": 78.9275, "matched_fragments": 329, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium palustre", "strain": "strain=CGMCC 1.12811", "accession": "GCA_014639535.1", "taxid": 1476463, "species_taxid": 1476463, "relation_to_type": "type", "validated": true, "ani": 78.9216, "matched_fragments": 313, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limicola", "strain": "strain=DSM 15094", "accession": "GCA_003634755.1", "taxid": 180441, "species_taxid": 180441, "relation_to_type": "type", "validated": true, "ani": 78.8398, "matched_fragments": 311, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flevense", "strain": "strain=NBRC 14960", "accession": "GCA_006539745.1", "taxid": 983, "species_taxid": 983, "relation_to_type": "type", "validated": true, "ani": 78.7394, "matched_fragments": 347, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cellulosilyticum", "strain": "strain=AR-3-4", "accession": "GCA_004349355.1", "taxid": 2541731, "species_taxid": 2541731, "relation_to_type": "type", "validated": true, "ani": 78.7154, "matched_fragments": 338, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium omnivorum", "strain": "strain=CGMCC 1.2747", "accession": "GCA_900099915.1", "taxid": 178355, "species_taxid": 178355, "relation_to_type": "type", "validated": true, "ani": 78.6755, "matched_fragments": 310, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium petrolei", "strain": "strain=Kopri-42", "accession": "GCA_003314435.2", "taxid": 2259594, "species_taxid": 2259594, "relation_to_type": "type", "validated": true, "ani": 78.5927, "matched_fragments": 344, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 78.5793, "matched_fragments": 307, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium alvei", "strain": "strain=HR-AY", "accession": "GCA_002920895.1", "taxid": 2080416, "species_taxid": 2080416, "relation_to_type": "type", "validated": true, "ani": 78.5578, "matched_fragments": 299, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 78.5269, "matched_fragments": 290, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xueshanense", "strain": "strain=CGMCC 1.9227", "accession": "GCA_900112975.1", "taxid": 935223, "species_taxid": 935223, "relation_to_type": "type", "validated": true, "ani": 78.4373, "matched_fragments": 305, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tiangeerense", "strain": "strain=CGMCC 1.6847", "accession": "GCA_007830355.1", "taxid": 459471, "species_taxid": 459471, "relation_to_type": "type", "validated": true, "ani": 78.3165, "matched_fragments": 302, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium channae", "strain": "strain=KSM-R2A30", "accession": "GCA_021172165.1", "taxid": 2897181, "species_taxid": 2897181, "relation_to_type": "type", "validated": true, "ani": 77.9915, "matched_fragments": 164, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cyclinae", "strain": "strain=KSM-R2A25", "accession": "GCA_021172145.1", "taxid": 2895947, "species_taxid": 2895947, "relation_to_type": "type", "validated": true, "ani": 77.9251, "matched_fragments": 172, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium jumunjinense", "strain": "strain=HME7102", "accession": "GCA_021650975.2", "taxid": 998845, "species_taxid": 998845, "relation_to_type": "type", "validated": true, "ani": 77.9088, "matched_fragments": 184, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003076455.1", "gtdb_species": "s__Flavobacterium faecale", "ani": 100.0, "matched_fragments": 1538, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013294005.1", "gtdb_species": "s__Flavobacterium sp013294005", "ani": 80.5948, "matched_fragments": 496, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.41", "min_intra_species_ani": "97.36", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_013294025.1", "gtdb_species": "s__Flavobacterium sp013294025", "ani": 80.446, "matched_fragments": 444, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000425505.1", "gtdb_species": "s__Flavobacterium frigidarium", "ani": 79.6892, "matched_fragments": 398, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014305155.1", "gtdb_species": "s__Flavobacterium sp014305155", "ani": 79.4685, "matched_fragments": 428, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002813295.1", "gtdb_species": "s__Flavobacterium sp002813295", "ani": 79.2968, "matched_fragments": 330, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009909155.2", "gtdb_species": "s__Flavobacterium undicola", "ani": 79.2963, "matched_fragments": 360, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014305095.1", "gtdb_species": "s__Flavobacterium kayseriense", "ani": 79.1446, "matched_fragments": 354, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "98.32", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_004016525.1", "gtdb_species": "s__Flavobacterium sufflavum", "ani": 79.0394, "matched_fragments": 348, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003688495.1", "gtdb_species": "s__Flavobacterium weaverense", "ani": 79.0114, "matched_fragments": 296, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013284035.1", "gtdb_species": "s__Flavobacterium sp003096795", "ani": 78.9694, "matched_fragments": 313, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.66", "min_intra_species_ani": "97.66", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000695795.1", "gtdb_species": "s__Flavobacterium seoulense", "ani": 78.9648, "matched_fragments": 334, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014281985.1", "gtdb_species": "s__Flavobacterium sp014281985", "ani": 78.9443, "matched_fragments": 346, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "98.07", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014639535.1", "gtdb_species": "s__Flavobacterium palustre", "ani": 78.9131, "matched_fragments": 316, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002280815.1", "gtdb_species": "s__Flavobacterium sp002280815", "ani": 78.8517, "matched_fragments": 311, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004349355.1", "gtdb_species": "s__Flavobacterium cellulosilyticum", "ani": 78.7162, "matched_fragments": 338, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002754195.1", "gtdb_species": "s__Flavobacterium sp002754195", "ani": 78.6969, 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"genome_size": 4621120.0, "gc_content": 35.2, "coding_genes": 3711.0, "rRNA16S_genes": 5.145, "tRNA_genes": 66.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.347, "range_salinity": 0.333, "facultative_respiration": 0.049, "anaerobic_respiration": 0.019, "aerobic_respiration": 0.931, "mesophilic_range_tmp": 0.789, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.21, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "faecale" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }