{ "type": "genome", "identifier": "GCF_003086355.1", "organism": "Streptococcus chenjunshii", "title": "Streptococcus chenjunshii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute for Communicable Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003086355.1", "bioproject": "PRJNA224116", "biosample": "SAMN08990899", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2173853", "species_taxid": "2173853", "organism_name": "Streptococcus chenjunshii", "infraspecific_name": "strain=Z15", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/27", "asm_name": "ASM308635v2", "asm_submitter": "National Institute for Communicable Disease Control and Prevention", "gbrs_paired_asm": "GCA_003086355.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/086/355/GCF_003086355.1_ASM308635v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2443046", "genome_size_ungapped": "2443046", "gc_percent": "42.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003086355.1-RS_2024_04_05", "annotation_date": "2024-04-05", "total_gene_count": "2314", "protein_coding_gene_count": "2190", "non_coding_gene_count": "87", "pubmed_id": "30785389" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-27", "dateModified": "2018-08-27", "datePublished": "2018-08-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus chenjunshii" ], "sample_taxid": [ "2173853" ], "sample_host_organism": [ "Tibetan antelope" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Qinghai province, Yushu, Hoh Xil" ], "sample_host_location_id": [], "data_size": "0.687 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2443046", "Number of Sequences": "1", "Longest Sequences (bp)": "2443046", "N50 (bp)": "2443046", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.9", "Number of CDSs": "2230", "Average Protein Length": "301.0", "Coding Ratio (%)": "82.4", "Number of rRNAs": "15", "Number of tRNAs": "67", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus chenjunshii", "strain": "strain=Z15", "accession": "GCA_003086355.2", "taxid": 2173853, "species_taxid": 2173853, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 811, "total_fragments": 814, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus pantholopis", "strain": "strain=TA 26", "accession": "GCA_001642085.1", "taxid": 1811193, "species_taxid": 1811193, "relation_to_type": "type", "validated": true, "ani": 82.3376, "matched_fragments": 515, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pseudoporcinus", "strain": "strain=NCTC13786", "accession": "GCA_900637075.1", "taxid": 361101, "species_taxid": 361101, "relation_to_type": "type", "validated": true, "ani": 79.3373, "matched_fragments": 63, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pseudoporcinus", "strain": "strain=LQ 940-04", "accession": "GCA_000188035.3", "taxid": 361101, "species_taxid": 361101, "relation_to_type": "type", "validated": true, "ani": 78.9621, "matched_fragments": 62, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus agalactiae", "strain": "strain=NCTC8181", "accession": "GCA_900458965.1", "taxid": 1311, "species_taxid": 1311, "relation_to_type": "suspected-type", "validated": true, "ani": 78.7829, "matched_fragments": 71, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus lutetiensis", "strain": "strain=FDAARGOS_1018", "accession": "GCA_016403165.1", "taxid": 150055, "species_taxid": 150055, "relation_to_type": "type", "validated": true, "ani": 78.7052, "matched_fragments": 80, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sobrinus", "strain": "strain=SL1", "accession": "GCA_003172995.1", "taxid": 1310, "species_taxid": 1310, "relation_to_type": "type", "validated": true, "ani": 78.6629, "matched_fragments": 69, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ferus", "strain": "strain=NCTC12278", "accession": "GCA_900475025.1", "taxid": 1345, "species_taxid": 1345, "relation_to_type": "type", "validated": true, "ani": 78.1911, "matched_fragments": 91, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus henryi", "strain": "strain=DSM 19005", "accession": "GCA_000376985.1", "taxid": 439219, "species_taxid": 439219, "relation_to_type": "type", "validated": true, "ani": 77.3146, "matched_fragments": 74, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ferus", "strain": "strain=DSM 20646", "accession": "GCA_000372425.1", "taxid": 1345, "species_taxid": 1345, "relation_to_type": "type", "validated": true, "ani": 77.2726, "matched_fragments": 85, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ratti", "strain": "strain=FA-1", "accession": "GCA_000286075.1", "taxid": 1341, "species_taxid": 1341, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2531, "matched_fragments": 122, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus caballi", "strain": "strain=DSM 19004", "accession": "GCA_000379985.1", "taxid": 439220, "species_taxid": 439220, "relation_to_type": "type", "validated": true, "ani": 77.2509, "matched_fragments": 94, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus agalactiae", "strain": "strain=ATCC 13813", "accession": "GCA_000186445.1", "taxid": 1311, "species_taxid": 1311, "relation_to_type": "type", "validated": true, "ani": 77.2061, "matched_fragments": 63, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ratti", "strain": "strain=DSM 20564", "accession": "GCA_000347915.1", "taxid": 1341, "species_taxid": 1341, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1183, "matched_fragments": 113, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus equi subsp. ruminatorum", "strain": "strain=CECT 5772", "accession": "GCA_000706805.1", "taxid": 254358, "species_taxid": 1336, "relation_to_type": "type", "validated": true, "ani": 77.0472, "matched_fragments": 65, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sobrinus", "strain": "strain=DSM 20742", "accession": "GCA_000686605.1", "taxid": 1310, "species_taxid": 1310, "relation_to_type": "type", "validated": true, "ani": 76.9757, "matched_fragments": 64, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003086355.1", "gtdb_species": "s__Streptococcus chenjunshii", "ani": 100.0, "matched_fragments": 812, "total_fragments": 814, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_001642085.1", "gtdb_species": "s__Streptococcus pantholopis", "ani": 82.349, "matched_fragments": 511, "total_fragments": 814, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" 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