{ "type": "genome", "identifier": "GCF_003096095.1", "organism": "Dietzia psychralcaliphila", "title": "Dietzia psychralcaliphila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Peking University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003096095.1", "bioproject": "PRJNA224116", "biosample": "SAMN04880516", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "139021", "species_taxid": "139021", "organism_name": "Dietzia psychralcaliphila", "infraspecific_name": "strain=ILA-1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/07", "asm_name": "ASM309609v1", "asm_submitter": "Peking University", "gbrs_paired_asm": "GCA_003096095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/096/095/GCF_003096095.1_ASM309609v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3904836", "genome_size_ungapped": "3904836", "gc_percent": "69.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003096095.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "3651", "protein_coding_gene_count": "3565", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-07", "dateModified": "2018-05-07", "datePublished": "2018-05-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Dietzia psychralcaliphila" ], "sample_taxid": [ "139021" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "1.055 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3904836", "Number of Sequences": "2", "Longest Sequences (bp)": "3878247", "N50 (bp)": "3878247", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.7", "Number of CDSs": "3650", "Average Protein Length": "325.4", "Coding Ratio (%)": "91.3", "Number of rRNAs": "9", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dietzia psychralcaliphila", "strain": "strain=ILA-1", "accession": "GCA_003096095.1", "taxid": 139021, "species_taxid": 139021, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1300, "total_fragments": 1300, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Dietzia psychralcaliphila", "strain": "strain=DSM 44820", "accession": "GCA_003046525.1", "taxid": 139021, "species_taxid": 139021, "relation_to_type": "type", "validated": true, "ani": 99.9764, "matched_fragments": 1276, "total_fragments": 1300, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Dietzia psychralcaliphila", "strain": "strain=ILA-1", "accession": "GCA_009806395.1", "taxid": 139021, "species_taxid": 139021, "relation_to_type": "type", "validated": true, "ani": 99.8383, "matched_fragments": 1073, "total_fragments": 1300, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Dietzia cercidiphylli", "strain": "strain=YIM 65002T", "accession": "GCA_014145145.1", "taxid": 498199, "species_taxid": 498199, "relation_to_type": "type", "validated": true, "ani": 90.2982, "matched_fragments": 694, "total_fragments": 1300, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dietzia 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