{
    "type": "genome",
    "identifier": "GCF_003096175.1",
    "organism": "Clostridium drakei",
    "title": "Clostridium drakei",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Korean Advanced Institute of Science and Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003096175.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06834810",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "332101",
        "species_taxid": "332101",
        "organism_name": "Clostridium drakei",
        "infraspecific_name": "strain=SL1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/05/07",
        "asm_name": "ASM309617v1",
        "asm_submitter": "Korean Advanced Institute of Science and Technology",
        "gbrs_paired_asm": "GCA_003096175.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/096/175/GCF_003096175.1_ASM309617v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5695241",
        "genome_size_ungapped": "5695241",
        "gc_percent": "29.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003096175.1-RS_2024_04_12",
        "annotation_date": "2024-04-12",
        "total_gene_count": "5171",
        "protein_coding_gene_count": "5007",
        "non_coding_gene_count": "127",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-05-07",
    "dateModified": "2018-05-07",
    "datePublished": "2018-05-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Clostridium drakei"
        ],
        "sample_taxid": [
            "332101"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany"
        ],
        "sample_host_location_id": [],
        "data_size": "1.541 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5695241",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "5695241",
        "N50 (bp)": "5695241",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "29.7",
        "Number of CDSs": "5105",
        "Average Protein Length": "314.2",
        "Coding Ratio (%)": "84.5",
        "Number of rRNAs": "30",
        "Number of tRNAs": "90",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Clostridium drakei",
                "strain": "strain=SL1",
                "accession": "GCA_003096175.1",
                "taxid": 332101,
                "species_taxid": 332101,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1896,
                "total_fragments": 1898,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Clostridium drakei",
                "strain": "strain=SL1",
                "accession": "GCA_000633595.2",
                "taxid": 332101,
                "species_taxid": 332101,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9576,
                "matched_fragments": 1797,
                "total_fragments": 1898,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Clostridium scatologenes",
                "strain": "strain=ATCC 25775",
                "accession": "GCA_000968375.1",
                "taxid": 1548,
                "species_taxid": 1548,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.0468,
                "matched_fragments": 1634,
                "total_fragments": 1898,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Clostridium carboxidivorans",
                "strain": "strain=P7",
                "accession": "GCA_001038625.1",
                "taxid": 217159,
                "species_taxid": 217159,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.2058,
                "matched_fragments": 1426,
                "total_fragments": 1898,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium carboxidivorans",
                "strain": "strain=P7",
                "accession": "GCA_000175595.1",
                "taxid": 217159,
                "species_taxid": 217159,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.0715,
                "matched_fragments": 1315,
                "total_fragments": 1898,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium muellerianum",
                "strain": "strain=P21",
                "accession": "GCA_012926525.1",
                "taxid": 2716538,
                "species_taxid": 2716538,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.358,
                "matched_fragments": 1177,
                "total_fragments": 1898,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium autoethanogenum",
                "strain": "strain=DSM 10061",
                "accession": "GCA_000484505.2",
                "taxid": 84023,
                "species_taxid": 84023,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.7093,
                "matched_fragments": 508,
                "total_fragments": 1898,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium thailandense",
                "strain": "strain=PL3",
                "accession": "GCA_019207025.1",
                "taxid": 2794346,
                "species_taxid": 2794346,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5635,
                "matched_fragments": 714,
                "total_fragments": 1898,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium kluyveri",
                "strain": "strain=NBRC 12016",
                "accession": "GCA_000010265.1",
                "taxid": 1534,
                "species_taxid": 1534,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5574,
                "matched_fragments": 290,
                "total_fragments": 1898,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium kluyveri",
                "strain": "strain=DSM 555",
                "accession": "GCA_000016505.1",
                "taxid": 1534,
                "species_taxid": 1534,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5041,
                "matched_fragments": 286,
                "total_fragments": 1898,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium mobile",
                "strain": "strain=MSJ-11",
                "accession": "GCA_018918285.1",
                "taxid": 2841512,
                "species_taxid": 2841512,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9062,
                "matched_fragments": 235,
                "total_fragments": 1898,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium simiarum",
                "strain": "strain=MSJ-4",
                "accession": "GCA_018919175.1",
                "taxid": 2841506,
                "species_taxid": 2841506,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4733,
                "matched_fragments": 200,
                "total_fragments": 1898,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000633595.2",
                "gtdb_species": "s__Clostridium_AM drakei",
                "ani": 99.9576,
                "matched_fragments": 1797,
                "total_fragments": 1898,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AM",
                "ani_circumscription_radius": 96.092,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000968375.1",
                "gtdb_species": "s__Clostridium_AM scatologenes",
                "ani": 96.0568,
                "matched_fragments": 1634,
                "total_fragments": 1898,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AM",
                "ani_circumscription_radius": 96.092,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001038625.1",
                "gtdb_species": "s__Clostridium_AM carboxidivorans",
                "ani": 92.2072,
                "matched_fragments": 1426,
                "total_fragments": 1898,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AM",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_012926525.1",
                "gtdb_species": "s__Clostridium_AM sp012926525",
                "ani": 86.3555,
                "matched_fragments": 1176,
                "total_fragments": 1898,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AM",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000143685.1",
                "gtdb_species": "s__Clostridium_B ljungdahlii",
                "ani": 79.9327,
                "matched_fragments": 530,
                "total_fragments": 1898,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "97.79",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_001623875.1",
                "gtdb_species": "s__Clostridium_AM magnum",
                "ani": 79.637,
                "matched_fragments": 611,
                "total_fragments": 1898,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AM",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_019207025.1",
                "gtdb_species": "s__Clostridium_AM sp019207025",
                "ani": 79.5686,
                "matched_fragments": 714,
                "total_fragments": 1898,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AM",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016316925.1",
                "gtdb_species": "s__Clostridium_AM aciditolerans",
                "ani": 78.8459,
                "matched_fragments": 521,
                "total_fragments": 1898,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AM",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.27",
                "min_intra_species_ani": "95.27",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900185645.1",
                "gtdb_species": "s__Clostridium_AK sp900185645",
                "ani": 77.4212,
                "matched_fragments": 234,
                "total_fragments": 1898,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AK",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.24",
                "min_intra_species_ani": "95.22",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": 0.477,
        "doubling_h": 0.38,
        "growth_tmp": 29.0,
        "optimum_tmp": 35.173,
        "optimum_ph": 6.947,
        "genome_size": 5662452.0,
        "gc_content": 29.7,
        "coding_genes": 4882.0,
        "rRNA16S_genes": 9.374,
        "tRNA_genes": 89.0,
        "gram_stain": 1.0,
        "sporulation": 0.967,
        "motility": 0.92,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.944,
        "thermophilic_range_tmp": 0.055,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Clostridium",
        "drakei"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}