{ "type": "genome", "identifier": "GCF_003097535.1", "organism": "Flavobacterium pallidum", "title": "Flavobacterium pallidum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003097535.1", "bioproject": "PRJNA224116", "biosample": "SAMN08969845", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2172098", "species_taxid": "2172098", "organism_name": "Flavobacterium pallidum", "infraspecific_name": "strain=HYN0049", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/08", "asm_name": "ASM309753v1", "asm_submitter": "Korea University", "gbrs_paired_asm": "GCA_003097535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/097/535/GCF_003097535.1_ASM309753v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3552756", "genome_size_ungapped": "3552756", "gc_percent": "43.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003097535.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2982", "protein_coding_gene_count": "2912", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-08", "dateModified": "2018-05-08", "datePublished": "2018-05-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium pallidum" ], "sample_taxid": [ "2172098" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.996 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3552756", "Number of Sequences": "1", "Longest Sequences (bp)": "3552756", "N50 (bp)": "3552756", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.7", "Number of CDSs": "2924", "Average Protein Length": "366.9", "Coding Ratio (%)": "90.6", "Number of rRNAs": "9", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium pallidum", "strain": "strain=HYN0049", "accession": "GCA_003097535.1", "taxid": 2172098, "species_taxid": 2172098, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1184, "total_fragments": 1184, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium magnum", "strain": "strain=HYN0048", "accession": "GCA_003055625.1", "taxid": 2162713, "species_taxid": 2162713, "relation_to_type": "type", "validated": true, "ani": 81.099, "matched_fragments": 717, "total_fragments": 1184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrotolerans", "strain": "strain=RB1R5", "accession": "GCA_003097635.1", "taxid": 2169410, "species_taxid": 2169410, "relation_to_type": "type", "validated": true, "ani": 77.626, "matched_fragments": 103, "total_fragments": 1184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium noncentrifugens", "strain": "strain=CGMCC 1.10076", "accession": "GCA_900100375.1", "taxid": 1128970, "species_taxid": 1128970, "relation_to_type": "type", "validated": true, "ani": 77.6016, "matched_fragments": 258, "total_fragments": 1184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium noncentrifugens", "strain": "strain=NBRC 108844", "accession": "GCA_007992475.1", "taxid": 1128970, "species_taxid": 1128970, "relation_to_type": "type", "validated": true, "ani": 77.5719, "matched_fragments": 259, "total_fragments": 1184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium lindanitolerans", "strain": "strain=DSM 21886", "accession": "GCA_003663835.1", "taxid": 428988, "species_taxid": 428988, "relation_to_type": "type", "validated": true, "ani": 77.5006, "matched_fragments": 149, "total_fragments": 1184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soli", "strain": "strain=DSM 19725", "accession": "GCA_000422705.1", "taxid": 344881, "species_taxid": 344881, "relation_to_type": "type", "validated": true, "ani": 77.4393, "matched_fragments": 157, "total_fragments": 1184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium lindanitolerans", "strain": "strain=IP-10", "accession": "GCA_002846575.1", "taxid": 428988, "species_taxid": 428988, "relation_to_type": "type", "validated": true, "ani": 77.4062, "matched_fragments": 150, "total_fragments": 1184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium microcysteis", "strain": "strain=MaA-Y11", "accession": "GCA_006385255.1", "taxid": 2596891, "species_taxid": 2596891, "relation_to_type": "type", "validated": true, "ani": 77.3983, "matched_fragments": 131, "total_fragments": 1184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium supellecticarium", "strain": "strain=CC-CTC003", "accession": "GCA_004801375.1", "taxid": 2565924, "species_taxid": 2565924, "relation_to_type": "type", "validated": true, "ani": 77.2574, "matched_fragments": 103, "total_fragments": 1184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sinopsychrotolerans", "strain": "strain=CGMCC 1.8704", "accession": "GCA_900110375.1", "taxid": 604089, "species_taxid": 604089, "relation_to_type": "type", "validated": true, "ani": 77.0767, "matched_fragments": 108, "total_fragments": 1184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xueshanense", "strain": "strain=CGMCC 1.9227", "accession": "GCA_900112975.1", "taxid": 935223, "species_taxid": 935223, "relation_to_type": "type", "validated": true, "ani": 77.0297, "matched_fragments": 99, "total_fragments": 1184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium caeni", "strain": "strain=CGMCC 1.7031", "accession": "GCA_900101895.1", "taxid": 490189, "species_taxid": 490189, "relation_to_type": "type", "validated": true, "ani": 76.8264, "matched_fragments": 161, "total_fragments": 1184, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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"GCA_002256285.1", "gtdb_species": "s__Flavobacterium sp002256285", "ani": 79.3034, "matched_fragments": 474, "total_fragments": 1184, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003097635.1", "gtdb_species": "s__Flavobacterium psychrotolerans", "ani": 77.626, "matched_fragments": 103, "total_fragments": 1184, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900100375.1", "gtdb_species": 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microcysteis", "ani": 77.4209, "matched_fragments": 130, "total_fragments": 1184, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000422705.1", "gtdb_species": "s__Flavobacterium soli", "ani": 77.4208, "matched_fragments": 155, "total_fragments": 1184, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002846575.1", "gtdb_species": "s__Flavobacterium lindanitolerans", "ani": 77.4062, 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"coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "pallidum" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }