{ "type": "genome", "identifier": "GCF_003097635.1", "organism": "Flavobacterium psychrotolerans", "title": "Flavobacterium psychrotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003097635.1", "bioproject": "PRJNA224116", "biosample": "SAMN08931429", "wgs_master": "QCZI00000000.1", "refseq_category": "reference genome", "taxid": "2169410", "species_taxid": "2169410", "organism_name": "Flavobacterium psychrotolerans", "infraspecific_name": "strain=RB1R5", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/08", "asm_name": "ASM309763v1", "asm_submitter": "Institute of Microbiology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_003097635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/097/635/GCF_003097635.1_ASM309763v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3240564", "genome_size_ungapped": "3240564", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "54", "contig_count": "54", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003097635.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2805", "protein_coding_gene_count": "2738", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-08", "dateModified": "2018-05-08", "datePublished": "2018-05-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium psychrotolerans" ], "sample_taxid": [ "2169410" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.911 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3240564", "Number of Sequences": "54", "Longest Sequences (bp)": "423319", "N50 (bp)": "156312", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.4", "Number of CDSs": "2712", "Average Protein Length": "342.2", "Coding Ratio (%)": "85.9", "Number of rRNAs": "4", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium psychrotolerans", "strain": "strain=RB1R5", "accession": "GCA_003097635.1", "taxid": 2169410, "species_taxid": 2169410, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1051, "total_fragments": 1055, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": "GCA_007097265.1", "taxid": 2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 79.4557, "matched_fragments": 395, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium luteum", "strain": "strain=NBRC 112527", "accession": "GCA_008806775.1", "taxid": 2026654, "species_taxid": 2026654, "relation_to_type": "type", "validated": true, "ani": 79.3254, "matched_fragments": 487, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium franklandianum", "strain": "strain=LB3P56", "accession": "GCA_007097365.1", "taxid": 2594430, "species_taxid": 2594430, "relation_to_type": "type", "validated": true, "ani": 79.1259, "matched_fragments": 385, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium rhamnosiphilum", "strain": "strain=LB3P52", "accession": "GCA_004349195.1", "taxid": 2541724, "species_taxid": 2541724, "relation_to_type": "type", "validated": true, "ani": 79.0973, "matched_fragments": 380, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium ranwuense", "strain": "strain=LB2P22", "accession": "GCA_004349315.1", "taxid": 2541725, "species_taxid": 2541725, "relation_to_type": "type", "validated": true, "ani": 78.9178, "matched_fragments": 391, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium alvei", "strain": "strain=HR-AY", "accession": "GCA_002920895.1", "taxid": 2080416, "species_taxid": 2080416, "relation_to_type": "type", "validated": true, "ani": 78.8942, "matched_fragments": 354, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glaciei", "strain": "strain=DSM 19728", "accession": "GCA_003350545.1", "taxid": 386300, "species_taxid": 386300, "relation_to_type": "type", "validated": true, "ani": 78.6605, "matched_fragments": 334, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 78.5571, "matched_fragments": 330, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hydatis", "strain": "strain=DSM 2063", "accession": "GCA_000737695.1", "taxid": 991, "species_taxid": 991, "relation_to_type": "type", "validated": true, "ani": 78.3265, "matched_fragments": 265, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hydatis", "strain": "strain=ATCC 29551", "accession": "GCA_002217335.1", "taxid": 991, "species_taxid": 991, "relation_to_type": "type", "validated": true, "ani": 78.2279, "matched_fragments": 262, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium degerlachei", "strain": "strain=DSM 15718", "accession": "GCA_900106645.1", "taxid": 229203, "species_taxid": 229203, "relation_to_type": "type", "validated": true, "ani": 78.2074, "matched_fragments": 283, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium turcicum", "strain": "strain=F-339", "accession": "GCA_011365745.1", "taxid": 2764718, "species_taxid": 2764718, "relation_to_type": "type", "validated": true, "ani": 78.1084, "matched_fragments": 256, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrophilum", "strain": "strain=ATCC 49418", "accession": "GCA_002217405.1", "taxid": 96345, "species_taxid": 96345, "relation_to_type": "type", "validated": true, "ani": 78.0547, "matched_fragments": 210, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrophilum", "strain": "strain=DSM 3660", "accession": "GCA_900101925.1", "taxid": 96345, "species_taxid": 96345, "relation_to_type": "type", "validated": true, "ani": 78.0333, "matched_fragments": 208, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glycines", "strain": "strain=Gm-149", "accession": "GCA_900100165.1", "taxid": 551990, "species_taxid": 551990, "relation_to_type": "type", "validated": true, "ani": 78.0074, "matched_fragments": 263, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tiangeerense", "strain": "strain=CGMCC 1.6847", "accession": "GCA_007830355.1", "taxid": 459471, "species_taxid": 459471, "relation_to_type": "type", "validated": true, "ani": 78.0066, "matched_fragments": 260, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrophilum", "strain": "strain=FPG3", "accession": "GCA_000754405.1", "taxid": 96345, "species_taxid": 96345, "relation_to_type": "type", "validated": true, "ani": 77.9942, "matched_fragments": 217, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 77.9805, "matched_fragments": 255, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquatile", "strain": "strain=LMG 4008", "accession": "GCA_000757385.1", "taxid": 245, 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true, "ani": 77.8197, "matched_fragments": 224, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sangjuense", "strain": "strain=GS03", "accession": "GCA_004797125.1", "taxid": 2518177, "species_taxid": 2518177, "relation_to_type": "type", "validated": true, "ani": 77.7533, "matched_fragments": 246, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium proteolyticum", "strain": "strain=1Y8A", "accession": "GCA_015223105.1", "taxid": 2911683, "species_taxid": 2911683, "relation_to_type": "type", "validated": true, "ani": 77.0956, "matched_fragments": 156, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cyclinae", "strain": "strain=KSM-R2A25", "accession": "GCA_021172145.1", "taxid": 2895947, "species_taxid": 2895947, "relation_to_type": "type", "validated": true, "ani": 77.0698, "matched_fragments": 156, "total_fragments": 1055, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003097635.1", "gtdb_species": "s__Flavobacterium psychrotolerans", "ani": 100.0, "matched_fragments": 1051, "total_fragments": 1055, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_007097265.1", "gtdb_species": "s__Flavobacterium gawalongense", "ani": 79.456, "matched_fragments": 395, "total_fragments": 1055, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, 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psychrophilum", "ani": 78.0547, "matched_fragments": 210, "total_fragments": 1055, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.22", "min_intra_species_ani": "98.91", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.83", "num_clustered_genomes": 157, "status": "-" }, { "accession": "GCF_004797125.1", "gtdb_species": "s__Flavobacterium sangjuense", "ani": 77.7533, "matched_fragments": 246, "total_fragments": 1055, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003525665.1", "gtdb_species": "s__Flavobacterium sp003525665", "ani": 77.5112, "matched_fragments": 234, "total_fragments": 1055, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001464475.1", "gtdb_species": "s__Flavobacterium sp001464475", "ani": 77.385, "matched_fragments": 235, "total_fragments": 1055, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013298525.1", "gtdb_species": "s__Flavobacterium sp013298525", "ani": 77.3767, "matched_fragments": 213, "total_fragments": 1055, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.326, "cell_length": 0.278, "doubling_h": 1.271, "growth_tmp": 24.705, "optimum_tmp": 25.047, "optimum_ph": 7.141, "genome_size": 3988255.815, "gc_content": 34.893, "coding_genes": 3154.048, "rRNA16S_genes": 5.145, "tRNA_genes": 58.611, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.347, "range_salinity": 0.333, "facultative_respiration": 0.049, "anaerobic_respiration": 0.019, "aerobic_respiration": 0.931, "mesophilic_range_tmp": 0.789, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.21, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "psychrotolerans" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }