{
    "type": "genome",
    "identifier": "GCF_003104955.1",
    "organism": "Steroidobacter cummioxidans",
    "title": "Steroidobacter cummioxidans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Indian Institute of Technology Mandi",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003104955.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04497038",
        "wgs_master": "LSRW00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1803913",
        "species_taxid": "1803913",
        "organism_name": "Steroidobacter cummioxidans",
        "infraspecific_name": "strain=35Y",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/05/09",
        "asm_name": "ASM310495v1",
        "asm_submitter": "Indian Institute of Technology Mandi",
        "gbrs_paired_asm": "GCA_003104955.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/104/955/GCF_003104955.1_ASM310495v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7936208",
        "genome_size_ungapped": "7936208",
        "gc_percent": "61.500000",
        "replicon_count": "0",
        "scaffold_count": "126",
        "contig_count": "126",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003104955.1-RS_2024_06_17",
        "annotation_date": "2024-06-17",
        "total_gene_count": "6870",
        "protein_coding_gene_count": "6679",
        "non_coding_gene_count": "60",
        "pubmed_id": "29851965"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-05-09",
    "dateModified": "2018-05-09",
    "datePublished": "2018-05-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Steroidobacter cummioxidans"
        ],
        "sample_taxid": [
            "1803913"
        ],
        "sample_host_organism": [
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        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
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        ],
        "sample_host_location_id": [],
        "data_size": "2.231 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
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        "Longest Sequences (bp)": "336437",
        "N50 (bp)": "97490",
        "Gap Ratio (%)": "0.002444",
        "GCcontent (%)": "61.7",
        "Number of CDSs": "6771",
        "Average Protein Length": "348.5",
        "Coding Ratio (%)": "89.2",
        "Number of rRNAs": "5",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
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            {
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            },
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                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas lalucatii",
                "strain": "strain=R1b54",
                "accession": "GCA_018398425.1",
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                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas degradans",
                "strain": "strain=FDAARGOS_876",
                "accession": "GCA_016028635.1",
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                "species_taxid": 2968968,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Pseudomonas guguanensis",
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                "accession": "GCA_900104265.1",
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            },
            {
                "organism_name": "Pseudomonas hydrolytica",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Steroidobacterales;f__Steroidobacteraceae;g__Steroidobacter_A",
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                "mean_intra_species_ani": "N/A",
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    "_genome_taxon": [
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        "cummioxidans"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}