{ "type": "genome", "identifier": "GCF_003114855.1", "organism": "Leptospira ryugenii", "title": "Leptospira ryugenii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Laboratory of Parasitology, Department of Disease Control, Graduate School of Veterinary Medicine, Hokkaido University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003114855.1", "bioproject": "PRJNA224116", "biosample": "SAMD00111977", "wgs_master": "BFBB00000000.1", "refseq_category": "reference genome", "taxid": "1917863", "species_taxid": "1917863", "organism_name": "Leptospira ryugenii", "infraspecific_name": "strain=YH101", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/03/17", "asm_name": "ASM311485v1", "asm_submitter": "Laboratory of Parasitology, Department of Disease Control, Graduate School of Veterinary Medicine, Hokkaido University", "gbrs_paired_asm": "GCA_003114855.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/114/855/GCF_003114855.1_ASM311485v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3951395", "genome_size_ungapped": "3950653", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "24", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003114855.1-RS_2024_08_12", "annotation_date": "2024-08-12", "total_gene_count": "3731", "protein_coding_gene_count": "3666", "non_coding_gene_count": "42", "pubmed_id": "30817029" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-03-17", "dateModified": "2018-03-17", "datePublished": "2018-03-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Leptospira ryugenii" ], "sample_taxid": [ "1917863" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Shizuoka, Shizuoka" ], "sample_host_location_id": [], "data_size": "1.119 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3951395", "Number of Sequences": "24", "Longest Sequences (bp)": "923341", "N50 (bp)": "715814", "Gap Ratio (%)": "0.018778", "GCcontent (%)": "39.9", "Number of CDSs": "3674", "Average Protein Length": "328.6", "Coding Ratio (%)": "91.7", "Number of rRNAs": "4", "Number of tRNAs": "35", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leptospira ryugenii", "strain": "strain=YH101", "accession": "GCA_003114855.1", "taxid": 1917863, "species_taxid": 1917863, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1305, "total_fragments": 1305, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leptospira ognonensis", "strain": "strain=201702476", "accession": "GCA_004770745.1", "taxid": 2484945, "species_taxid": 2484945, "relation_to_type": "type", "validated": true, "ani": 77.3648, "matched_fragments": 197, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leptospira meyeri", "strain": "strain=DSM 21537", "accession": "GCA_004368965.1", "taxid": 29508, "species_taxid": 29508, "relation_to_type": "type", "validated": true, "ani": 77.0057, "matched_fragments": 170, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leptospira levettii", "strain": "strain=MCA2-B-A1", "accession": "GCA_002812085.1", "taxid": 2023178, "species_taxid": 2023178, 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