{ "type": "genome", "identifier": "GCF_003116815.1", "organism": "Caulobacter endophyticus", "title": "Caulobacter endophyticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Beijing Academy of Agriculture and Forestry Science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003116815.1", "bioproject": "PRJNA224116", "biosample": "SAMN08972772", "wgs_master": "QDKQ00000000.1", "refseq_category": "reference genome", "taxid": "2172652", "species_taxid": "2172652", "organism_name": "Caulobacter endophyticus", "infraspecific_name": "strain=774", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/02", "asm_name": "ASM311681v1", "asm_submitter": "Beijing Academy of Agriculture and Forestry Science", "gbrs_paired_asm": "GCA_003116815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/116/815/GCF_003116815.1_ASM311681v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5421256", "genome_size_ungapped": "5420956", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "78", "contig_count": "78", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003116815.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "5100", "protein_coding_gene_count": "4966", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-02", "dateModified": "2018-05-02", "datePublished": "2018-05-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Caulobacter endophyticus" ], "sample_taxid": [ "2172652" ], "sample_host_organism": [], 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"organism_name": "Phenylobacterium glaciei", "strain": "strain=20VBR1", "accession": "GCA_016772415.2", "taxid": 2803784, "species_taxid": 2803784, "relation_to_type": "type", "validated": true, "ani": 79.3002, "matched_fragments": 618, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Starkeya koreensis", "strain": "strain=Jip08", "accession": "GCA_023016525.1", "taxid": 266121, "species_taxid": 266121, "relation_to_type": "type", "validated": true, "ani": 76.0705, "matched_fragments": 263, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 75.6462, "matched_fragments": 294, "total_fragments": 1761, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, 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