{ "type": "genome", "identifier": "GCF_003122215.1", "organism": "Pararhodobacter marinus", "title": "Pararhodobacter marinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Third Institute of State Oceanic Administration (SOA)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003122215.1", "bioproject": "PRJNA224116", "biosample": "SAMN09080319", "wgs_master": "QEYD00000000.1", "refseq_category": "reference genome", "taxid": "2184063", "species_taxid": "2184063", "organism_name": "Pararhodobacter marinus", "infraspecific_name": "strain=CIC4N-9", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/13", "asm_name": "ASM312221v1", "asm_submitter": "The Third Institute of State Oceanic Administration (SOA)", "gbrs_paired_asm": "GCA_003122215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/122/215/GCF_003122215.1_ASM312221v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4486134", "genome_size_ungapped": "4486134", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003122215.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "4371", "protein_coding_gene_count": "4290", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-13", "dateModified": "2018-05-13", "datePublished": "2018-05-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Pararhodobacter marinus" ], "sample_taxid": [ "2184063" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indian Ocean" ], "sample_host_location_id": [], "data_size": "1.225 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4486134", "Number of Sequences": "30", "Longest Sequences (bp)": "544364", "N50 (bp)": "342552", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.7", "Number of CDSs": "4341", "Average Protein Length": "310.9", "Coding Ratio (%)": "90.3", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pararhodobacter marinus", "strain": "strain=CIC4N-9", "accession": "GCA_003122215.1", "taxid": 2184063, "species_taxid": 2184063, 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"organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", "accession": "GCA_007668225.1", "taxid": 2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 78.2217, "matched_fragments": 463, "total_fragments": 1482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter azotoformans", "strain": "strain=KA25", "accession": "GCA_003050905.1", "taxid": 43057, "species_taxid": 43057, "relation_to_type": "type", "validated": true, "ani": 78.1447, "matched_fragments": 453, "total_fragments": 1482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdonatronobacter sediminivivens", "strain": "strain=IM2376", "accession": "GCA_013415485.1", "taxid": 2743469, "species_taxid": 2743469, "relation_to_type": "type", "validated": true, "ani": 78.0628, "matched_fragments": 446, "total_fragments": 1482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum euryhalinum", 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