{
    "type": "genome",
    "identifier": "GCF_003122365.1",
    "organism": "Streptomyces spongiicola",
    "title": "Streptomyces spongiicola",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Hainan university",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003122365.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08984914",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1690221",
        "species_taxid": "1690221",
        "organism_name": "Streptomyces spongiicola",
        "infraspecific_name": "strain=HNM0071",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/05/14",
        "asm_name": "ASM312236v1",
        "asm_submitter": "Hainan university",
        "gbrs_paired_asm": "GCA_003122365.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/122/365/GCF_003122365.1_ASM312236v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7180417",
        "genome_size_ungapped": "7180417",
        "gc_percent": "72.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003122365.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "6008",
        "protein_coding_gene_count": "5739",
        "non_coding_gene_count": "87",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-05-14",
    "dateModified": "2018-05-14",
    "datePublished": "2018-05-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces spongiicola"
        ],
        "sample_taxid": [
            "1690221"
        ],
        "sample_host_organism": [
            "marine sponge"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Sanya"
        ],
        "sample_host_location_id": [],
        "data_size": "1.910 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 1.04,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7180417",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "7180417",
        "N50 (bp)": "7180417",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "72.4",
        "Number of CDSs": "6194",
        "Average Protein Length": "320.5",
        "Coding Ratio (%)": "83.0",
        "Number of rRNAs": "18",
        "Number of tRNAs": "82",
        "Number of CRISPRs": "8"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Streptomyces spongiicola",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 2392,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces tirandamycinicus",
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                "accession": "GCA_003097515.1",
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                "species_taxid": 2174846,
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                "ani": 92.3857,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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            },
            {
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                "accession": "GCA_005795905.1",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1777,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces formicae",
                "strain": "strain=1H-GS9",
                "accession": "GCA_022647665.1",
                "taxid": 1616117,
                "species_taxid": 1616117,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1498,
                "total_fragments": 2393,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces genisteinicus",
                "strain": "strain=CRPJ-33",
                "accession": "GCA_014489615.1",
                "taxid": 2768068,
                "species_taxid": 2768068,
                "relation_to_type": "type",
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                "ani": 82.2574,
                "matched_fragments": 1348,
                "total_fragments": 2393,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces sudanensis",
                "strain": "strain=SD 504",
                "accession": "GCA_023614315.1",
                "taxid": 436397,
                "species_taxid": 436397,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1221,
                "matched_fragments": 1103,
                "total_fragments": 2393,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces lichenis",
                "strain": "strain=LCR6-01",
                "accession": "GCA_023218175.1",
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                "species_taxid": 2306967,
                "relation_to_type": "type",
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                "ani": 81.9163,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces sennicomposti",
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                "accession": "GCA_019890635.1",
                "taxid": 2873384,
                "species_taxid": 2873384,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.236,
                "matched_fragments": 1200,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces longispororuber",
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                "taxid": 68230,
                "species_taxid": 68230,
                "relation_to_type": "type",
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                "ani": 81.1261,
                "matched_fragments": 1252,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces cyaneochromogenes",
                "strain": "strain=MK-45",
                "accession": "GCA_003963535.1",
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                "species_taxid": 2496836,
                "relation_to_type": "type",
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                "ani": 80.9583,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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        "gtdb_result": [
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                "accession": "GCF_003122365.1",
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                "matched_fragments": 2391,
                "total_fragments": 2393,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
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                "mean_intra_species_ani": "99.39",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "spongiicola"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}