{ "type": "genome", "identifier": "GCF_003123685.1", "organism": "Nocardia aurea", "title": "Nocardia aurea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003123685.1", "bioproject": "PRJNA224116", "biosample": "SAMN08826618", "wgs_master": "QCYJ00000000.1", "refseq_category": "reference genome", "taxid": "2144174", "species_taxid": "2144174", "organism_name": "Nocardia aurea", "infraspecific_name": "strain=SYSU K10002", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/14", "asm_name": "ASM312368v1", "asm_submitter": "Sun Yat-sen University", "gbrs_paired_asm": "GCA_003123685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/123/685/GCF_003123685.1_ASM312368v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9368495", "genome_size_ungapped": "9368495", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "185", "contig_count": "185", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003123685.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "8776", "protein_coding_gene_count": "8565", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-14", "dateModified": "2018-05-14", "datePublished": "2018-05-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardia aurea" ], "sample_taxid": [ "2144174" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Guizhou" ], "sample_host_location_id": [], "data_size": "2.560 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 19.0, "max": 19.0 }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9368495", "Number of Sequences": "185", "Longest Sequences (bp)": "871040", "N50 (bp)": "532346", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.4", "Number of CDSs": "8616", "Average Protein Length": "313.6", "Coding Ratio (%)": "86.5", "Number of rRNAs": "4", "Number of tRNAs": "74", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardia aurea", "strain": "strain=SYSU K10002", "accession": "GCA_003123685.1", "taxid": 2144174, "species_taxid": 2144174, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3028, "total_fragments": 3034, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardia noduli", "strain": "strain=ncl1", "accession": "GCA_019038455.1", "taxid": 2815722, "species_taxid": 2815722, "relation_to_type": "type", "validated": true, "ani": 95.2003, "matched_fragments": 2129, "total_fragments": 3034, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Nocardia arizonensis", "strain": "strain=W9405", "accession": "GCA_001310275.1", "taxid": 1141647, "species_taxid": 1141647, "relation_to_type": "type", "validated": true, "ani": 82.4509, "matched_fragments": 1426, "total_fragments": 3034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia arizonensis", "strain": "strain=NBRC 108935", "accession": "GCA_001618405.1", "taxid": 1141647, "species_taxid": 1141647, "relation_to_type": "type", "validated": true, "ani": 82.4323, "matched_fragments": 1452, "total_fragments": 3034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia 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"accession": "GCA_001613365.1", "taxid": 238964, "species_taxid": 238964, "relation_to_type": "type", "validated": true, "ani": 81.5585, "matched_fragments": 1343, "total_fragments": 3034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia vulneris", "strain": "strain=NBRC 108936", "accession": "GCA_001613425.1", "taxid": 1141657, "species_taxid": 1141657, "relation_to_type": "type", "validated": true, "ani": 80.9614, "matched_fragments": 1265, "total_fragments": 3034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia suismassiliense", "strain": "strain=S-137", "accession": "GCA_900269665.1", "taxid": 2077092, "species_taxid": 2077092, "relation_to_type": "type", "validated": true, "ani": 80.9397, "matched_fragments": 1281, "total_fragments": 3034, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia vulneris", "strain": "strain=W9851", "accession": "GCA_000811985.1", "taxid": 1141657, 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