{ "type": "genome", "identifier": "GCF_003129485.1", "organism": "Polaribacter aquimarinus", "title": "Polaribacter aquimarinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong Uniwersity at Weihai", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003129485.1", "bioproject": "PRJNA224116", "biosample": "SAMN09111996", "wgs_master": "QFFG00000000.1", "refseq_category": "reference genome", "taxid": "2100726", "species_taxid": "2100726", "organism_name": "Polaribacter aquimarinus", "infraspecific_name": "strain=ZY113", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/15", "asm_name": "ASM312948v1", "asm_submitter": "Shandong Uniwersity at Weihai", "gbrs_paired_asm": "GCA_003129485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/129/485/GCF_003129485.1_ASM312948v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3371861", "genome_size_ungapped": "3371851", "gc_percent": "30.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003129485.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3002", "protein_coding_gene_count": "2951", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-15", "dateModified": "2018-05-15", "datePublished": "2018-05-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Polaribacter aquimarinus" ], "sample_taxid": [ "2100726" ], "sample_host_organism": [ "red alga" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Shandong" ], "sample_host_location_id": [], "data_size": "0.922 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3371861", "Number of Sequences": "20", "Longest Sequences (bp)": "843390", "N50 (bp)": "556476", "Gap Ratio (%)": "0.000297", "GCcontent (%)": "30.1", "Number of CDSs": "2960", "Average Protein Length": "349.3", "Coding Ratio (%)": "92.0", "Number of rRNAs": "3", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polaribacter aquimarinus", "strain": "strain=ZY113", "accession": "GCA_003129485.1", "taxid": 2100726, "species_taxid": 2100726, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1114, 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"status": "below_threshold" }, { "organism_name": "Polaribacter porphyrae", "strain": "strain=LMG 26671", "accession": "GCA_020532745.1", "taxid": 1137780, "species_taxid": 1137780, "relation_to_type": "type", "validated": true, "ani": 80.4263, "matched_fragments": 579, "total_fragments": 1114, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter sejongensis", "strain": "strain=KCTC 23670", "accession": "GCA_002814075.1", "taxid": 985043, "species_taxid": 985043, "relation_to_type": "type", "validated": true, "ani": 80.3388, "matched_fragments": 598, "total_fragments": 1114, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter porphyrae", "strain": "strain=NBRC 108759", "accession": "GCA_002954685.1", "taxid": 1137780, "species_taxid": 1137780, "relation_to_type": "type", "validated": true, "ani": 80.3108, "matched_fragments": 609, "total_fragments": 1114, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter atrinae", "strain": "strain=KACC 17473", "accession": "GCA_001640115.1", "taxid": 1333662, "species_taxid": 1333662, "relation_to_type": "type", "validated": true, "ani": 80.3103, "matched_fragments": 596, "total_fragments": 1114, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter vadi", "strain": "strain=LPB0003", "accession": "GCA_001761365.1", "taxid": 1774273, "species_taxid": 1774273, "relation_to_type": "type", "validated": true, "ani": 80.0121, "matched_fragments": 605, "total_fragments": 1114, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter vadi", "strain": "strain=LPB0003", "accession": "GCA_001680885.1", "taxid": 1774273, "species_taxid": 1774273, "relation_to_type": "type", "validated": true, "ani": 79.9665, "matched_fragments": 603, "total_fragments": 1114, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=DSW-5", "accession": "GCA_900106865.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 79.8802, "matched_fragments": 544, "total_fragments": 1114, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=KCTC 12392", "accession": "GCA_024362345.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 79.8323, "matched_fragments": 547, "total_fragments": 1114, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=DSW-5", "accession": "GCA_001280865.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 79.8106, "matched_fragments": 549, "total_fragments": 1114, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter cellanae", "strain": "strain=SM13", "accession": "GCA_017569185.1", "taxid": 2818493, "species_taxid": 2818493, "relation_to_type": "type", "validated": true, "ani": 79.739, "matched_fragments": 582, "total_fragments": 1114, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter batillariae", "strain": "strain=G4M1", "accession": "GCA_017498485.1", "taxid": 2808900, "species_taxid": 2808900, "relation_to_type": "type", "validated": true, "ani": 79.6993, "matched_fragments": 574, "total_fragments": 1114, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter glomeratus", "strain": "strain=ACAM 171", "accession": "GCA_007997115.1", "taxid": 102, "species_taxid": 102, "relation_to_type": "type", "validated": true, "ani": 79.5503, "matched_fragments": 543, "total_fragments": 1114, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter glomeratus", "strain": "strain=ATCC 43844", "accession": "GCA_002954665.1", "taxid": 102, "species_taxid": 102, "relation_to_type": "type", "validated": true, "ani": 79.4841, "matched_fragments": 560, "total_fragments": 1114, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter filamentus", "strain": "strain=ATCC 700397", "accession": "GCA_002943715.1", "taxid": 53483, "species_taxid": 53483, "relation_to_type": "type", "validated": true, "ani": 79.2737, "matched_fragments": 536, "total_fragments": 1114, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003129485.1", "gtdb_species": "s__Polaribacter sp003129485", "ani": 100.0, "matched_fragments": 1114, "total_fragments": 1114, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Polaribacter", "aquimarinus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }