{
    "type": "genome",
    "identifier": "GCF_003130585.1",
    "organism": "Brachybacterium endophyticum",
    "title": "Brachybacterium endophyticum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Research Center for Medicine & Biology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003130585.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09041774",
        "wgs_master": "QFKX00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2182385",
        "species_taxid": "2182385",
        "organism_name": "Brachybacterium endophyticum",
        "infraspecific_name": "strain=M1HQ-2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/05/16",
        "asm_name": "ASM313058v1",
        "asm_submitter": "Research Center for Medicine & Biology",
        "gbrs_paired_asm": "GCA_003130585.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/130/585/GCF_003130585.1_ASM313058v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3553347",
        "genome_size_ungapped": "3553347",
        "gc_percent": "71.000000",
        "replicon_count": "0",
        "scaffold_count": "17",
        "contig_count": "17",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003130585.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "3190",
        "protein_coding_gene_count": "3103",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-05-16",
    "dateModified": "2018-05-16",
    "datePublished": "2018-05-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Brachybacterium endophyticum"
        ],
        "sample_taxid": [
            "2182385"
        ],
        "sample_host_organism": [
            "Scutellaria baicalensis"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Guizhou"
        ],
        "sample_host_location_id": [],
        "data_size": "0.947 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3553347",
        "Number of Sequences": "17",
        "Longest Sequences (bp)": "1008051",
        "N50 (bp)": "999987",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "71.0",
        "Number of CDSs": "3174",
        "Average Protein Length": "339.1",
        "Coding Ratio (%)": "90.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Brachybacterium endophyticum",
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                "species_taxid": 2182385,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1175,
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                "status": "conclusive"
            },
            {
                "organism_name": "Brachybacterium kimchii",
                "strain": "strain=CBA3104",
                "accession": "GCA_023373525.1",
                "taxid": 2942909,
                "species_taxid": 2942909,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1177,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_009299795.1",
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                "validated": true,
                "ani": 85.037,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachybacterium halotolerans subsp. kimchii",
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                "relation_to_type": "type",
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                "ani": 85.007,
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                "total_fragments": 1177,
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            },
            {
                "organism_name": "Brachybacterium halotolerans",
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                "matched_fragments": 906,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brachybacterium epidermidis",
                "strain": "strain=Marseille-Q2903",
                "accession": "GCA_015209585.1",
                "taxid": 2781983,
                "species_taxid": 2781983,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3211,
                "matched_fragments": 462,
                "total_fragments": 1177,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanitalea stevensii",
                "strain": "strain=Sa1BUA1",
                "accession": "GCA_014837105.1",
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                "species_taxid": 2763072,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1508,
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                "total_fragments": 1177,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas avistercoris",
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                "accession": "GCA_014836445.1",
                "taxid": 2762242,
                "species_taxid": 2762242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.721,
                "matched_fragments": 287,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
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        "gtdb_result": [
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                "accession": "GCF_003130585.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
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                "mean_intra_species_ani": "N/A",
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            {
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    "_genome_taxon": [
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}