{ "type": "genome", "identifier": "GCF_003130795.1", "organism": "Azospirillum thermophilum", "title": "Azospirillum thermophilum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Henan Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003130795.1", "bioproject": "PRJNA224116", "biosample": "SAMN09041438", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2202148", "species_taxid": "2202148", "organism_name": "Azospirillum thermophilum", "infraspecific_name": "strain=CFH 70021", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/17", "asm_name": "ASM313079v1", "asm_submitter": "Henan Normal University", "gbrs_paired_asm": "GCA_003130795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/130/795/GCF_003130795.1_ASM313079v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6776313", "genome_size_ungapped": "6776313", "gc_percent": "70.000000", "replicon_count": "9", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003130795.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "6313", "protein_coding_gene_count": "6010", "non_coding_gene_count": "95", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-17", "dateModified": "2018-05-17", "datePublished": "2018-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Azospirillum thermophilum" ], "sample_taxid": [ "2202148" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Yunnan Province" ], "sample_host_location_id": [], "data_size": "1.819 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 5.01, "strain_heterogeneity": 33.33, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6776313", "Number of Sequences": "9", "Longest Sequences (bp)": "2538983", "N50 (bp)": "1351902", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.8", "Number of CDSs": "6366", "Average Protein Length": "313.5", "Coding Ratio (%)": "88.4", "Number of rRNAs": "20", "Number of tRNAs": "83", "Number of CRISPRs": "8" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Azospirillum thermophilum", "strain": "strain=CFH 70021", "accession": "GCA_003130795.1", "taxid": 2202148, "species_taxid": 2202148, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2251, "total_fragments": 2255, 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"strain=CC-NFb-7", "accession": "GCA_013340925.1", "taxid": 861533, "species_taxid": 861533, "relation_to_type": "type", "validated": true, "ani": 83.2992, "matched_fragments": 1073, "total_fragments": 2255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum argentinense", "strain": "strain=Az39", "accession": "GCA_000632475.2", "taxid": 2970906, "species_taxid": 2970906, "relation_to_type": "type", "validated": true, "ani": 83.2883, "matched_fragments": 1259, "total_fragments": 2255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum rugosum", "strain": "strain=IMMIB AFH-6", "accession": "GCA_017876155.1", "taxid": 416170, "species_taxid": 416170, "relation_to_type": "type", "validated": true, "ani": 83.2872, "matched_fragments": 1353, "total_fragments": 2255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum picis", "strain": "strain=IMMIB TAR-3", "accession": "GCA_017876115.1", 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1079, "total_fragments": 2255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibaculum pallidiluteum", "strain": "strain=SYSU D00532", "accession": "GCA_017355985.1", "taxid": 2812559, "species_taxid": 2812559, "relation_to_type": "type", "validated": true, "ani": 78.3555, "matched_fragments": 717, "total_fragments": 2255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagibius marinus", "strain": "strain=NBU2595", "accession": "GCA_014925385.1", "taxid": 2762760, "species_taxid": 2762760, "relation_to_type": "type", "validated": true, "ani": 77.3792, "matched_fragments": 541, "total_fragments": 2255, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 5.01, "strain_heterogeneity": 33.33 }, "gtdb_result": [ { "accession": "GCF_003130795.1", "gtdb_species": "s__Azospirillum thermophilum", "ani": 100.0, "matched_fragments": 2252, "total_fragments": 2255, "gtdb_taxonomy": 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