{ "type": "genome", "identifier": "GCF_003131185.1", "organism": "Pseudomonas ovata", "title": "Pseudomonas ovata", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Fujian Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003131185.1", "bioproject": "PRJNA224116", "biosample": "SAMN09090848", "wgs_master": "QFFU00000000.1", "refseq_category": "reference genome", "taxid": "1839709", "species_taxid": "1839709", "organism_name": "Pseudomonas ovata", "infraspecific_name": "strain=F51", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/18", "asm_name": "ASM313118v1", "asm_submitter": "Fujian Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_003131185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/131/185/GCF_003131185.1_ASM313118v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6445752", "genome_size_ungapped": "6445752", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "72", "contig_count": "72", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003131185.1-RS_2024_04_03", "annotation_date": "2024-04-03", "total_gene_count": "5894", "protein_coding_gene_count": "5709", "non_coding_gene_count": "73", "pubmed_id": "31263923" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-18", "dateModified": "2018-05-18", "datePublished": "2018-05-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas ovata" ], "sample_taxid": [ "1839709" ], "sample_host_organism": [ "Maccullochella peelii peelii" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Yueqing city, Zhejiang province" ], "sample_host_location_id": [], "data_size": "1.792 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6445752", "Number of Sequences": "72", "Longest Sequences (bp)": "695081", "N50 (bp)": "214983", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.9", "Number of CDSs": "5776", "Average Protein Length": "323.8", "Coding Ratio (%)": "87.1", "Number of rRNAs": "1", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas ekonensis", "strain": "strain=COR58", "accession": "GCA_019145435.1", "taxid": 2842353, "species_taxid": 2842353, "relation_to_type": "type", "validated": 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95, "status": "below_threshold" }, { "organism_name": "Pseudomonas batumici", "strain": "strain=UCM B-321", "accession": "GCA_000820515.1", "taxid": 226910, "species_taxid": 226910, "relation_to_type": "type", "validated": true, "ani": 81.6247, "matched_fragments": 960, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas avellanae", "strain": "strain=JCM 11937", "accession": "GCA_014646595.1", "taxid": 46257, "species_taxid": 46257, "relation_to_type": "type", "validated": true, "ani": 81.5813, "matched_fragments": 996, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae", "strain": "strain=NCPPB 3739", "accession": "GCA_000233835.2", "taxid": 317, "species_taxid": 317, "relation_to_type": "pathovar", "validated": true, "ani": 81.5702, "matched_fragments": 938, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas avellanae", "strain": "strain=BPIC 631", "accession": "GCA_000302915.1", "taxid": 46257, "species_taxid": 46257, "relation_to_type": "type", "validated": true, "ani": 81.5374, "matched_fragments": 1063, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas japonica", "strain": "strain=DSM 22348", "accession": "GCA_900188455.1", "taxid": 256466, "species_taxid": 256466, "relation_to_type": "type", "validated": true, "ani": 81.5322, "matched_fragments": 981, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae group genomosp. 3", "strain": "strain=ICMP3963", "accession": "GCA_001401175.1", "taxid": 251701, "species_taxid": 251701, "relation_to_type": "pathovar", "validated": true, "ani": 81.5309, "matched_fragments": 1015, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas kilonensis", "strain": "strain=DSM 13647", "accession": "GCA_001269885.1", "taxid": 132476, "species_taxid": 132476, "relation_to_type": "type", "validated": true, "ani": 81.5247, "matched_fragments": 980, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae", "strain": "strain=ICMP 9617", "accession": "GCA_000658965.1", "taxid": 317, "species_taxid": 317, "relation_to_type": "pathovar", "validated": true, "ani": 81.5143, "matched_fragments": 1062, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae group genomosp. 3", "strain": "strain=CFBP 1702", "accession": "GCA_000935765.1", "taxid": 251701, "species_taxid": 251701, "relation_to_type": "pathovar", "validated": true, "ani": 81.4885, "matched_fragments": 1056, "total_fragments": 2117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas brassicacearum", "strain": "strain=JCM 11938", "accession": 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