{ "type": "genome", "identifier": "GCF_003143555.1", "organism": "Saliniradius amylolyticus", "title": "Saliniradius amylolyticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hankuk University of Foreign Studies", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003143555.1", "bioproject": "PRJNA224116", "biosample": "SAMN09065712", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2183582", "species_taxid": "2183582", "organism_name": "Saliniradius amylolyticus", "infraspecific_name": "strain=HMF8227", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/19", "asm_name": "ASM314355v1", "asm_submitter": "Hankuk University of Foreign Studies", "gbrs_paired_asm": "GCA_003143555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/143/555/GCF_003143555.1_ASM314355v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3214946", "genome_size_ungapped": "3214946", "gc_percent": "52.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003143555.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3004", "protein_coding_gene_count": "2930", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-19", "dateModified": "2018-05-19", "datePublished": "2018-05-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Saliniradius amylolyticus" ], "sample_taxid": [ "2183582" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Shinan" ], "sample_host_location_id": [], "data_size": "0.917 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3214946", "Number of Sequences": "1", "Longest Sequences (bp)": "3214946", "N50 (bp)": "3214946", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.1", "Number of CDSs": "2940", "Average Protein Length": "330.2", "Coding Ratio (%)": "90.6", "Number of rRNAs": "12", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Saliniradius amylolyticus", "strain": "strain=HMF8227", "accession": "GCA_003143555.1", "taxid": 2183582, "species_taxid": 2183582, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1070, "total_fragments": 1071, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Salinimonas lutimaris", "strain": "strain=DPSR-4", "accession": "GCA_005222225.1", "taxid": 914153, "species_taxid": 914153, "relation_to_type": "type", "validated": true, "ani": 78.5408, "matched_fragments": 81, "total_fragments": 1071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas lipolytica", "strain": "strain=JW12", "accession": "GCA_001758465.1", "taxid": 1856405, "species_taxid": 1856405, "relation_to_type": "type", "validated": true, "ani": 78.4832, "matched_fragments": 78, "total_fragments": 1071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacimicrobium alkaliphilum", "strain": "strain=CGMCC 1.12923", "accession": "GCA_014640135.1", "taxid": 1526571, "species_taxid": 1526571, "relation_to_type": "type", "validated": true, "ani": 77.5137, "matched_fragments": 133, "total_fragments": 1071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacimicrobium alkaliphilum", "strain": "strain=X13M-12", "accession": "GCA_002591895.1", "taxid": 1526571, "species_taxid": 1526571, "relation_to_type": "type", "validated": true, "ani": 77.4818, "matched_fragments": 135, "total_fragments": 1071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas alba", "strain": "strain=190", "accession": "GCA_002993365.1", "taxid": 2079529, "species_taxid": 2079529, "relation_to_type": "type", "validated": true, "ani": 77.4728, "matched_fragments": 87, "total_fragments": 1071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariibacter halophilus", "strain": "strain=JC2043", "accession": "GCA_020687825.1", "taxid": 226011, "species_taxid": 226011, "relation_to_type": "type", "validated": true, "ani": 77.2589, "matched_fragments": 110, "total_fragments": 1071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bowmanella dokdonensis", "strain": "strain=JCM 30855", "accession": "GCA_017254865.1", "taxid": 751969, "species_taxid": 751969, "relation_to_type": "type", "validated": true, "ani": 77.1439, "matched_fragments": 188, "total_fragments": 1071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferrimonas sediminicola", "strain": "strain=IMCC35001", "accession": "GCA_005116715.1", "taxid": 2569538, "species_taxid": 2569538, "relation_to_type": "type", "validated": true, "ani": 76.5113, "matched_fragments": 61, "total_fragments": 1071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferrimonas marina", "strain": "strain=DSM 16917", "accession": "GCA_900129905.1", "taxid": 299255, "species_taxid": 299255, "relation_to_type": "type", "validated": true, "ani": 76.3337, "matched_fragments": 63, "total_fragments": 1071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferrimonas sediminum", "strain": "strain=DSM 23317", "accession": "GCA_900100175.1", "taxid": 718193, "species_taxid": 718193, "relation_to_type": "type", "validated": true, "ani": 76.2916, "matched_fragments": 62, "total_fragments": 1071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferrimonas marina", "strain": "strain=NBRC 102583", "accession": "GCA_001571125.1", "taxid": 299255, "species_taxid": 299255, "relation_to_type": "type", "validated": true, "ani": 76.1953, "matched_fragments": 62, "total_fragments": 1071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella jiangmenensis", "strain": "strain=JM162201", "accession": "GCA_018596335.1", "taxid": 2837387, "species_taxid": 2837387, "relation_to_type": "type", "validated": true, "ani": 76.1832, "matched_fragments": 53, "total_fragments": 1071, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003143555.1", "gtdb_species": "s__Saliniradius amylolyticus", "ani": 100.0, "matched_fragments": 1070, "total_fragments": 1071, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Saliniradius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_005222225.1", "gtdb_species": "s__Alteromonas lutimaris", "ani": 78.5655, "matched_fragments": 81, "total_fragments": 1071, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003584565.2", "gtdb_species": "s__Alteromonas sp002729795", "ani": 78.4926, "matched_fragments": 71, "total_fragments": 1071, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.21", "min_intra_species_ani": "97.21", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001466725.1", "gtdb_species": "s__Lacimicrobium alkaliphilum_B", "ani": 77.7959, "matched_fragments": 184, "total_fragments": 1071, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Lacimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001660395.1", "gtdb_species": "s__XY-R5 sp001660395", "ani": 77.5853, "matched_fragments": 80, "total_fragments": 1071, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__XY-R5", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002591895.1", "gtdb_species": "s__Lacimicrobium alkaliphilum", "ani": 77.4818, "matched_fragments": 135, "total_fragments": 1071, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Lacimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002993365.1", "gtdb_species": "s__Alteromonas alba", "ani": 77.4377, "matched_fragments": 88, "total_fragments": 1071, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002201535.1", "gtdb_species": "s__Lacimicrobium sp002201535", "ani": 77.3957, "matched_fragments": 149, "total_fragments": 1071, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Lacimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018531185.1", "gtdb_species": "s__Bowmanella sp018531185", "ani": 77.3766, "matched_fragments": 133, "total_fragments": 1071, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Bowmanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.11", "min_intra_species_ani": "96.11", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002887595.1", "gtdb_species": "s__Bowmanella denitrificans", "ani": 77.3109, "matched_fragments": 145, "total_fragments": 1071, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Bowmanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019249245.1", "gtdb_species": "s__Alteromonas lipotrueiana", "ani": 77.3093, "matched_fragments": 55, "total_fragments": 1071, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017254865.1", "gtdb_species": "s__Bowmanella dokdonensis", "ani": 77.1439, "matched_fragments": 188, "total_fragments": 1071, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Bowmanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000243075.1", "gtdb_species": "s__Oceanimonas sp000243075", "ani": 77.1067, "matched_fragments": 88, "total_fragments": 1071, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Oceanimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002339125.1", "gtdb_species": "s__Alteromonas sp002335925", "ani": 76.9644, "matched_fragments": 79, "total_fragments": 1071, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.57", "min_intra_species_ani": "96.36", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.83", "num_clustered_genomes": 19, "status": "-" }, { "accession": "GCF_005116715.1", "gtdb_species": "s__Ferrimonas sp005116715", "ani": 76.48, "matched_fragments": 62, "total_fragments": 1071, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Ferrimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900100175.1", "gtdb_species": "s__Ferrimonas sediminum", "ani": 76.3397, "matched_fragments": 65, "total_fragments": 1071, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Ferrimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Saliniradius", "amylolyticus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }