{ "type": "genome", "identifier": "GCF_003143755.1", "organism": "Algibacter marinivivus", "title": "Algibacter marinivivus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong Uniwersity at Weihai", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003143755.1", "bioproject": "PRJNA224116", "biosample": "SAMN09195924", "wgs_master": "QFRI00000000.1", "refseq_category": "reference genome", "taxid": "2100723", "species_taxid": "2100723", "organism_name": "Algibacter marinivivus", "infraspecific_name": "strain=ZY111", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/19", "asm_name": "ASM314375v1", "asm_submitter": "Shandong Uniwersity at Weihai", "gbrs_paired_asm": "GCA_003143755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/143/755/GCF_003143755.1_ASM314375v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3339969", "genome_size_ungapped": "3339949", "gc_percent": "32.000000", "replicon_count": "0", "scaffold_count": "11", "contig_count": "11", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003143755.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "2983", "protein_coding_gene_count": "2929", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-19", "dateModified": "2018-05-19", "datePublished": "2018-05-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Algibacter marinivivus" ], "sample_taxid": [ "2100723" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Shandong" ], "sample_host_location_id": [], "data_size": "0.923 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3339969", "Number of Sequences": "11", "Longest Sequences (bp)": "1892538", "N50 (bp)": "1892538", "Gap Ratio (%)": "0.000599", "GCcontent (%)": "31.9", "Number of CDSs": "2930", "Average Protein Length": "344.0", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Algibacter marinivivus", "strain": "strain=ZY111", "accession": "GCA_003143755.1", "taxid": 2100723, "species_taxid": 2100723, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1108, "total_fragments": 1108, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=DSM 29199", "accession": "GCA_014202225.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 80.5752, "matched_fragments": 625, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=P7-3-5", "accession": "GCA_000283015.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 80.5111, "matched_fragments": 647, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_008630605.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 80.5003, "matched_fragments": 629, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=CGMCC 1.12213", "accession": "GCA_900141715.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 80.4938, "matched_fragments": 650, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_007559325.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 80.4876, "matched_fragments": 631, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pectinivorans", "strain": "strain=DSM 25730", "accession": "GCA_900112595.1", "taxid": 870482, "species_taxid": 870482, "relation_to_type": "type", "validated": true, "ani": 80.3939, "matched_fragments": 602, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga 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"taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 78.4361, "matched_fragments": 428, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 2799948, "relation_to_type": "type", "validated": true, "ani": 78.3294, "matched_fragments": 459, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera flava", "strain": "strain=NBU2984", "accession": "GCA_023634025.1", "taxid": 2930218, "species_taxid": 2930218, "relation_to_type": "type", "validated": true, "ani": 77.6898, "matched_fragments": 257, "total_fragments": 1108, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003143755.1", "gtdb_species": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Algibacter", "marinivivus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }