{
    "type": "genome",
    "identifier": "GCF_003144495.1",
    "organism": "Proteus terrae subsp. cibarius",
    "title": "Proteus terrae subsp. cibarius",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute for Communicable Disease Control and Prevention, China CDC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003144495.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07957732",
        "wgs_master": "PGWT00000000.1",
        "refseq_category": "na",
        "taxid": "626774",
        "species_taxid": "1574161",
        "organism_name": "Proteus terrae subsp. cibarius",
        "infraspecific_name": "strain=JCM 30699",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/05/21",
        "asm_name": "ASM314449v1",
        "asm_submitter": "National Institute for Communicable Disease Control and Prevention, China CDC",
        "gbrs_paired_asm": "GCA_003144495.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/144/495/GCF_003144495.1_ASM314449v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3922849",
        "genome_size_ungapped": "3922849",
        "gc_percent": "38.000000",
        "replicon_count": "0",
        "scaffold_count": "45",
        "contig_count": "45",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003144495.1-RS_2024_03_27",
        "annotation_date": "2024-03-27",
        "total_gene_count": "3595",
        "protein_coding_gene_count": "3476",
        "non_coding_gene_count": "76",
        "pubmed_id": "29297845"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-05-21",
    "dateModified": "2018-05-21",
    "datePublished": "2018-05-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Proteus terrae subsp. cibarius"
        ],
        "sample_taxid": [
            "626774"
        ],
        "sample_host_organism": [
            "not collected"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea"
        ],
        "sample_host_location_id": [],
        "data_size": "1.113 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3922849",
        "Number of Sequences": "45",
        "Longest Sequences (bp)": "302471",
        "N50 (bp)": "159372",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.8",
        "Number of CDSs": "3514",
        "Average Protein Length": "317.3",
        "Coding Ratio (%)": "85.3",
        "Number of rRNAs": "2",
        "Number of tRNAs": "73",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Proteus terrae subsp. cibarius",
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                "relation_to_type": "type",
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                "total_fragments": 1284,
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            },
            {
                "organism_name": "Proteus terrae",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "conclusive"
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            {
                "organism_name": "Proteus columbae",
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            },
            {
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                "species_taxid": 1973495,
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                "ani": 92.6932,
                "matched_fragments": 1108,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "organism_name": "Proteus cibi",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Proteus faecis",
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                "accession": "GCA_003144395.1",
                "taxid": 2050967,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Proteus penneri",
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                "ani_threshold": 95,
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            {
                "organism_name": "Providencia manganoxydans",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Photorhabdus temperata",
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                "accession": "GCA_025384845.1",
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                "relation_to_type": "type",
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                "ani": 77.9407,
                "matched_fragments": 195,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella bonaserana",
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                "ani": 77.7185,
                "matched_fragments": 97,
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            },
            {
                "organism_name": "Photobacterium toruni",
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                "status": "below_threshold"
            }
        ],
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                "accession": "GCF_011045835.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Proteus",
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            },
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    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "subsp.",
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}