{ "type": "genome", "identifier": "GCF_003148385.1", "organism": "Flavobacterium sediminis", "title": "Flavobacterium sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Marine Biodiversity Institute of Korea", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003148385.1", "bioproject": "PRJNA224116", "biosample": "SAMN09205926", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2201181", "species_taxid": "2201181", "organism_name": "Flavobacterium sediminis", "infraspecific_name": "strain=MEBiC07310", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/23", "asm_name": "ASM314838v1", "asm_submitter": "National Marine Biodiversity Institute of Korea", "gbrs_paired_asm": "GCA_003148385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/148/385/GCF_003148385.1_ASM314838v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3441304", "genome_size_ungapped": "3441304", "gc_percent": "35.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003148385.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3243", "protein_coding_gene_count": "3059", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-23", "dateModified": "2018-05-23", "datePublished": "2018-05-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium sediminis" ], "sample_taxid": [ "2201181" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.958 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3441304", "Number of Sequences": "1", "Longest Sequences (bp)": "3441304", "N50 (bp)": "3441304", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.2", "Number of CDSs": "3244", "Average Protein Length": "320.2", "Coding Ratio (%)": "90.6", "Number of rRNAs": "9", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium sediminis", "strain": "strain=MEBiC07310", "accession": "GCA_003148385.1", "taxid": 2201181, "species_taxid": 2201181, 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78.335, "matched_fragments": 262, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium channae", "strain": "strain=KSM-R2A30", "accession": "GCA_021172165.1", "taxid": 2897181, "species_taxid": 2897181, "relation_to_type": "type", "validated": true, "ani": 78.27, "matched_fragments": 260, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium profundi", "strain": "strain=TP390", "accession": "GCA_006491645.1", "taxid": 1774945, "species_taxid": 1774945, "relation_to_type": "type", "validated": true, "ani": 78.2379, "matched_fragments": 297, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium profundi", "strain": "strain=TP390", "accession": "GCA_009753805.1", "taxid": 1774945, "species_taxid": 1774945, "relation_to_type": "type", "validated": true, "ani": 78.2379, "matched_fragments": 297, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oreochromis", "strain": "strain=Costa Rica 04-02-TN", "accession": "GCA_019565455.1", "taxid": 2906078, "species_taxid": 2906078, "relation_to_type": "type", "validated": true, "ani": 78.1317, "matched_fragments": 152, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium indicum", "strain": "strain=GPTSA100-9", "accession": "GCA_000455605.1", "taxid": 312277, "species_taxid": 312277, "relation_to_type": "type", "validated": true, "ani": 78.0679, "matched_fragments": 193, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium proteolyticum", "strain": "strain=1Y8A", "accession": "GCA_015223105.1", "taxid": 2911683, "species_taxid": 2911683, "relation_to_type": "type", "validated": true, "ani": 78.0057, "matched_fragments": 225, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sediminilitoris", "strain": "strain=YSM-43", "accession": "GCA_023008245.1", "taxid": 2024526, "species_taxid": 2024526, "relation_to_type": "type", "validated": true, "ani": 77.9708, "matched_fragments": 267, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tibetense", "strain": "strain=YH5", "accession": "GCA_003293845.1", "taxid": 2233533, "species_taxid": 2233533, "relation_to_type": "type", "validated": true, "ani": 77.9516, "matched_fragments": 251, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium jejuense", "strain": "strain=EC11", "accession": "GCA_006491595.2", "taxid": 1544455, "species_taxid": 1544455, "relation_to_type": "type", "validated": true, "ani": 77.9212, "matched_fragments": 279, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquaticum", "strain": "strain=CGMCC 1.12398", "accession": "GCA_003259835.1", "taxid": 1236486, "species_taxid": 1236486, "relation_to_type": "type", "validated": true, "ani": 77.9154, "matched_fragments": 253, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium jumunjinense", "strain": "strain=HME7102", "accession": "GCA_021650975.2", "taxid": 998845, "species_taxid": 998845, "relation_to_type": "type", "validated": true, "ani": 77.697, "matched_fragments": 247, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium lutivivi", "strain": "strain=CGMCC 1.15347", "accession": "GCA_014642275.1", "taxid": 1677894, "species_taxid": 1677894, "relation_to_type": "type", "validated": true, "ani": 77.2435, "matched_fragments": 133, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 77.1088, "matched_fragments": 144, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 77.0275, "matched_fragments": 133, "total_fragments": 1147, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003148385.1", "gtdb_species": "s__Flavobacterium sediminis", "ani": 100.0, "matched_fragments": 1146, "total_fragments": 1147, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, 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