{ "type": "genome", "identifier": "GCF_003148685.1", "organism": "Actinoplanes xinjiangensis", "title": "Actinoplanes xinjiangensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003148685.1", "bioproject": "PRJNA224116", "biosample": "SAMN05443670", "wgs_master": "QGGR00000000.1", "refseq_category": "na", "taxid": "512350", "species_taxid": "512350", "organism_name": "Actinoplanes xinjiangensis", "infraspecific_name": "strain=DSM 45184", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/22", "asm_name": "ASM314868v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003148685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/148/685/GCF_003148685.1_ASM314868v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10797414", "genome_size_ungapped": "10796271", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "86", "contig_count": "86", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003148685.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "9775", "protein_coding_gene_count": "9549", "non_coding_gene_count": "102", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-22", "dateModified": "2018-05-22", "datePublished": "2018-05-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinoplanes xinjiangensis" ], "sample_taxid": [ "512350" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.900 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10797414", "Number of Sequences": "86", "Longest Sequences (bp)": "805024", "N50 (bp)": "300231", "Gap Ratio (%)": "0.010586", "GCcontent (%)": "70.7", "Number of CDSs": "9813", "Average Protein Length": "327.6", "Coding Ratio (%)": "89.3", "Number of rRNAs": "3", "Number of tRNAs": "110", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinoplanes xinjiangensis", "strain": "strain=DSM 45184", "accession": "GCA_003148685.1", "taxid": 512350, "species_taxid": 512350, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3551, "total_fragments": 3553, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinoplanes philippinensis", "strain": "strain=NBRC 13878", "accession": "GCA_016862335.1", "taxid": 35752, "species_taxid": 35752, "relation_to_type": "type", "validated": true, "ani": 89.1401, "matched_fragments": 2593, "total_fragments": 3553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes philippinensis", "strain": "strain=DSM 43019", "accession": "GCA_900113015.1", "taxid": 35752, "species_taxid": 35752, "relation_to_type": "type", "validated": true, "ani": 89.1318, "matched_fragments": 2627, "total_fragments": 3553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes italicus", "strain": "strain=NBRC 13911", "accession": "GCA_016862235.1", "taxid": 113567, "species_taxid": 113567, "relation_to_type": "type", "validated": true, "ani": 86.2582, "matched_fragments": 2415, "total_fragments": 3553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes italicus", "strain": "strain=DSM 43146", "accession": "GCA_003001815.1", "taxid": 113567, "species_taxid": 113567, "relation_to_type": "type", "validated": true, "ani": 86.2252, "matched_fragments": 2456, "total_fragments": 3553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes utahensis", "strain": "strain=NBRC 13244", "accession": "GCA_016862455.1", "taxid": 1869, "species_taxid": 1869, "relation_to_type": "type", "validated": true, "ani": 85.1734, "matched_fragments": 2122, "total_fragments": 3553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes capillaceus", "strain": "strain=NBRC 16408", "accession": "GCA_016862055.1", "taxid": 76756, "species_taxid": 76756, "relation_to_type": "type", "validated": true, "ani": 84.9923, "matched_fragments": 2084, "total_fragments": 3553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes campanulatus", "strain": "strain=NBRC 12511", "accession": "GCA_016862035.1", "taxid": 113559, "species_taxid": 113559, "relation_to_type": "type", "validated": true, "ani": 84.9679, "matched_fragments": 2127, "total_fragments": 3553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes flavus", "strain": "strain=NEAU-H7", "accession": "GCA_017592555.1", "taxid": 2820290, "species_taxid": 2820290, "relation_to_type": "type", "validated": true, "ani": 84.9631, "matched_fragments": 2118, "total_fragments": 3553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes derwentensis", "strain": "strain=DSM 43941", "accession": "GCA_900104725.1", "taxid": 113562, "species_taxid": 113562, "relation_to_type": "type", "validated": true, "ani": 84.2303, "matched_fragments": 2155, "total_fragments": 3553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes derwentensis", "strain": "strain=NBRC 14935", "accession": "GCA_016862135.1", "taxid": 113562, "species_taxid": 113562, "relation_to_type": "type", "validated": true, "ani": 84.15, "matched_fragments": 2144, "total_fragments": 3553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes missouriensis", "strain": "strain=431", "accession": "GCA_000284295.1", "taxid": 1866, "species_taxid": 1866, "relation_to_type": "type", "validated": true, "ani": 83.0795, "matched_fragments": 1858, "total_fragments": 3553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes lutulentus", "strain": "strain=DSM 45883", "accession": "GCA_014191235.1", "taxid": 1287878, "species_taxid": 1287878, "relation_to_type": "type", "validated": true, "ani": 82.4605, "matched_fragments": 1863, "total_fragments": 3553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes lutulentus", "strain": "strain=CGMCC 4.7090", "accession": "GCA_003259845.1", 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53359, "relation_to_type": "type", "validated": true, "ani": 77.2454, "matched_fragments": 1089, "total_fragments": 3553, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium matsuzakiense", "strain": "strain=NRRL B-16293", "accession": "GCA_025264725.1", "taxid": 53360, "species_taxid": 53360, "relation_to_type": "type", "validated": true, "ani": 77.1214, "matched_fragments": 1258, "total_fragments": 3553, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003148685.1", "gtdb_species": "s__Actinoplanes xinjiangensis", "ani": 100.0, "matched_fragments": 3551, "total_fragments": 3553, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", 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1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.088, "cell_length": 0.194, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 27.203, "optimum_ph": 7.5, "genome_size": 10797414.0, "gc_content": 70.815, "coding_genes": 8199.833, "rRNA16S_genes": 4.5, "tRNA_genes": 63.0, "gram_stain": 1.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.666, "coccobacillus_cell_shape": 0.333, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Actinoplanes", "xinjiangensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }