{ "type": "genome", "identifier": "GCF_003149085.1", "organism": "Dyadobacter jejuensis", "title": "Dyadobacter jejuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003149085.1", "bioproject": "PRJNA224116", "biosample": "SAMN07620964", "wgs_master": "QGDT00000000.1", "refseq_category": "reference genome", "taxid": "1082580", "species_taxid": "1082580", "organism_name": "Dyadobacter jejuensis", "infraspecific_name": "strain=DSM 100346", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/22", "asm_name": "ASM314908v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003149085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/149/085/GCF_003149085.1_ASM314908v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5761522", "genome_size_ungapped": "5761313", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "72", "contig_count": "72", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003149085.1-RS_2024_09_16", "annotation_date": "2024-09-16", "total_gene_count": "4636", "protein_coding_gene_count": "4558", "non_coding_gene_count": "42", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-22", "dateModified": "2018-05-22", "datePublished": "2018-05-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Dyadobacter jejuensis" ], "sample_taxid": [ "1082580" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.644 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5761522", "Number of Sequences": "72", "Longest Sequences (bp)": "1034732", "N50 (bp)": "341286", "Gap Ratio (%)": "0.003628", "GCcontent (%)": "45.4", "Number of CDSs": "4479", "Average Protein Length": "367.9", "Coding Ratio (%)": "85.8", "Number of rRNAs": "2", "Number of tRNAs": "36", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dyadobacter jejuensis", "strain": "strain=DSM 100346", "accession": "GCA_003149085.1", "taxid": 1082580, "species_taxid": 1082580, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1884, "total_fragments": 1885, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Dyadobacter tibetensis", "strain": "strain=Y620-1", "accession": "GCA_000566685.1", "taxid": 1211851, "species_taxid": 1211851, "relation_to_type": "type", "validated": true, "ani": 79.3459, "matched_fragments": 448, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter luteus", "strain": "strain=RS19", "accession": "GCA_003383615.1", "taxid": 2259619, "species_taxid": 2259619, "relation_to_type": "type", "validated": true, "ani": 77.6047, "matched_fragments": 129, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter alkalitolerans", "strain": "strain=DSM 23607", "accession": "GCA_000428845.1", "taxid": 492736, "species_taxid": 492736, "relation_to_type": "type", "validated": true, "ani": 77.387, "matched_fragments": 109, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter subterraneus", "strain": "strain=UP-52", "accession": "GCA_015221875.1", "taxid": 2773304, "species_taxid": 2773304, "relation_to_type": "type", "validated": true, "ani": 77.3435, "matched_fragments": 119, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter sediminis", "strain": "strain=CGMCC 1.12895", "accession": "GCA_014640015.1", "taxid": 1493691, "species_taxid": 1493691, "relation_to_type": "type", "validated": true, "ani": 77.2281, "matched_fragments": 110, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter flavalbus", "strain": "strain=NS28", "accession": "GCA_006149045.1", "taxid": 2579942, "species_taxid": 2579942, "relation_to_type": "type", "validated": true, "ani": 77.195, "matched_fragments": 113, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter sediminis", "strain": "strain=Z12", "accession": "GCA_005860765.1", "taxid": 1493691, "species_taxid": 1493691, "relation_to_type": "type", "validated": true, "ani": 77.1797, "matched_fragments": 112, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter bucti", "strain": "strain=QTA69", "accession": "GCA_005869225.1", "taxid": 2572203, "species_taxid": 2572203, "relation_to_type": "type", "validated": true, "ani": 77.0695, "matched_fragments": 137, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter psychrotolerans", "strain": "strain=AR-3-6", "accession": "GCA_004349265.1", "taxid": 2541721, "species_taxid": 2541721, "relation_to_type": "type", "validated": true, "ani": 77.0334, "matched_fragments": 145, "total_fragments": 1885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter beijingensis", "strain": "strain=CGMCC 1.6375", "accession": "GCA_014645155.1", 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129, "total_fragments": 1885, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008369915.1", "gtdb_species": "s__Dyadobacter sp008369915", "ani": 77.4329, "matched_fragments": 113, "total_fragments": 1885, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000428845.1", "gtdb_species": "s__Dyadobacter alkalitolerans", "ani": 77.4129, "matched_fragments": 108, "total_fragments": 1885, "gtdb_taxonomy": 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