{
    "type": "genome",
    "identifier": "GCF_003149165.1",
    "organism": "Fibrobacter succinogenes subsp. elongatus",
    "title": "Fibrobacter succinogenes subsp. elongatus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003149165.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05661053",
        "wgs_master": "QGDP00000000.1",
        "refseq_category": "na",
        "taxid": "706585",
        "species_taxid": "833",
        "organism_name": "Fibrobacter succinogenes subsp. elongatus",
        "infraspecific_name": "strain=HM2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/05/22",
        "asm_name": "ASM314916v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_003149165.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/149/165/GCF_003149165.1_ASM314916v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3511778",
        "genome_size_ungapped": "3511083",
        "gc_percent": "48.500000",
        "replicon_count": "0",
        "scaffold_count": "9",
        "contig_count": "9",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003149165.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "2951",
        "protein_coding_gene_count": "2873",
        "non_coding_gene_count": "64",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-05-22",
    "dateModified": "2018-05-22",
    "datePublished": "2018-05-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Fibrobacter succinogenes subsp. elongatus"
        ],
        "sample_taxid": [
            "706585"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.996 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3511778",
        "Number of Sequences": "9",
        "Longest Sequences (bp)": "1619326",
        "N50 (bp)": "828402",
        "Gap Ratio (%)": "0.019791",
        "GCcontent (%)": "48.7",
        "Number of CDSs": "2876",
        "Average Protein Length": "369.3",
        "Coding Ratio (%)": "90.7",
        "Number of rRNAs": "4",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Fibrobacter succinogenes subsp. succinogenes",
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                "accession": "GCA_000146505.1",
                "taxid": 834,
                "species_taxid": 833,
                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Fibrobacter succinogenes subsp. succinogenes",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Hallerella succinigenes",
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                "taxid": 1896222,
                "species_taxid": 1896222,
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                "matched_fragments": 193,
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                "status": "below_threshold"
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            {
                "organism_name": "Hallerella porci",
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                "accession": "GCA_003148885.1",
                "taxid": 1945871,
                "species_taxid": 1945871,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            "contamination": 0.0,
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                "accession": "GCF_002210425.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Fibrobacter",
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                "mean_intra_species_ani": "97.37",
                "min_intra_species_ani": "97.19",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
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                "accession": "GCF_000146505.1",
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                "min_intra_species_af": "1.00",
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            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.22",
                "min_intra_species_ani": "97.22",
                "mean_intra_species_af": "0.89",
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            },
            {
                "accession": "GCF_900215325.1",
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            {
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                "num_clustered_genomes": 2,
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                "accession": "GCA_902791475.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Fibrobacter",
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            },
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                "accession": "GCF_002210345.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Fibrobacterota;c__Fibrobacteria;o__Fibrobacterales;f__Fibrobacteraceae;g__Fibrobacter",
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.097,
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        "doubling_h": null,
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        "gram_stain": 0.0,
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        "motility": 0.0,
        "range_salinity": null,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    "_genome_taxon": [
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        "succinogenes",
        "subsp.",
        "elongatus"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}