{ "type": "genome", "identifier": "GCF_003149455.1", "organism": "Chitinophaga deserti", "title": "Chitinophaga deserti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nanjing Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003149455.1", "bioproject": "PRJNA224116", "biosample": "SAMN09062270", "wgs_master": "QFFK00000000.1", "refseq_category": "reference genome", "taxid": "2164099", "species_taxid": "2164099", "organism_name": "Chitinophaga deserti", "infraspecific_name": "strain=XJ-2", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/18", "asm_name": "ASM314945v1", "asm_submitter": "Nanjing Agricultural University", "gbrs_paired_asm": "GCA_003149455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/149/455/GCF_003149455.1_ASM314945v1", "excluded_from_refseq": 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"ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chitinophaga rhizosphaerae", "strain": "strain=T16R-86", "accession": "GCA_003958645.1", "taxid": 1864947, "species_taxid": 1864947, "relation_to_type": "type", "validated": true, "ani": 81.9131, "matched_fragments": 1271, "total_fragments": 2097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga chungangae", "strain": "strain=MAH-28", "accession": "GCA_017742215.1", "taxid": 2821488, "species_taxid": 2821488, "relation_to_type": "type", "validated": true, "ani": 78.9237, "matched_fragments": 673, "total_fragments": 2097, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga barathri", "strain": "strain=YLT18", "accession": "GCA_003807585.1", "taxid": 1647451, "species_taxid": 1647451, "relation_to_type": "type", "validated": true, "ani": 78.9137, "matched_fragments": 685, "total_fragments": 2097, "ani_threshold": 95, "status": "below_threshold" }, { 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"mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003813775.1", "gtdb_species": "s__Chitinophaga lutea", "ani": 78.7801, "matched_fragments": 670, "total_fragments": 2097, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Chitinophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003568665.1", "gtdb_species": "s__Chitinophaga alhagiae", "ani": 78.3332, "matched_fragments": 579, "total_fragments": 2097, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Chitinophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", 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"num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.308, "cell_length": 0.473, "doubling_h": null, "growth_tmp": 28.733, "optimum_tmp": 26.937, "optimum_ph": 7.0, "genome_size": 7579043.287, "gc_content": 45.2, "coding_genes": 7126.333, "rRNA16S_genes": 6.0, "tRNA_genes": 72.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.181, "range_salinity": null, "facultative_respiration": 0.058, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.941, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Chitinophaga", "deserti" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }