{ "tc_result": [ { "organism_name": "Brucella anthropi", "strain": "strain=NCTC12168", "accession": "GCA_900454235.1", "taxid": 529, "species_taxid": 529, "relation_to_type": "type", "validated": true, "ani": 81.5937, "matched_fragments": 682, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella anthropi", "strain": "strain=ATCC 49188", "accession": "GCA_000017405.1", "taxid": 529, "species_taxid": 529, "relation_to_type": "type", "validated": true, "ani": 81.5521, "matched_fragments": 679, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella suis", "strain": "strain=1330", "accession": "GCA_000007505.1", "taxid": 29461, "species_taxid": 29461, "relation_to_type": "suspected-type", "validated": true, "ani": 81.1627, "matched_fragments": 606, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella daejeonensis", "strain": "strain=DSM 26944", "accession": "GCA_014199265.1", "taxid": 659015, "species_taxid": 659015, "relation_to_type": "type", "validated": true, "ani": 81.1613, "matched_fragments": 635, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella suis", "strain": "strain=1330", "accession": "GCA_000223195.1", "taxid": 29461, "species_taxid": 29461, "relation_to_type": "suspected-type", "validated": true, "ani": 81.1476, "matched_fragments": 608, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella suis", "strain": "strain=NCTC10316", "accession": "GCA_900460605.1", "taxid": 29461, "species_taxid": 29461, "relation_to_type": "suspected-type", "validated": true, "ani": 81.1178, "matched_fragments": 609, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella abortus", "strain": "strain=NCTC10093", "accession": "GCA_900446005.1", "taxid": 235, "species_taxid": 235, "relation_to_type": "type", "validated": true, "ani": 81.106, "matched_fragments": 613, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella inopinata", "strain": "strain=BO1", "accession": "GCA_000182725.1", "taxid": 1218315, "species_taxid": 1218315, "relation_to_type": "type", "validated": true, "ani": 81.1036, "matched_fragments": 601, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella abortus", "strain": "strain=544", "accession": "GCA_000369945.1", "taxid": 235, "species_taxid": 235, "relation_to_type": "type", "validated": true, "ani": 81.0805, "matched_fragments": 602, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella melitensis", "strain": "strain=16M", "accession": "GCA_000160295.1", "taxid": 29459, "species_taxid": 29459, "relation_to_type": "suspected-type", "validated": true, "ani": 81.0647, "matched_fragments": 596, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella melitensis", "strain": "strain=16M", "accession": "GCA_000007125.1", "taxid": 29459, "species_taxid": 29459, "relation_to_type": "suspected-type", "validated": true, "ani": 81.0315, "matched_fragments": 612, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella intermedia", "strain": "strain=NCTC12171", "accession": "GCA_900454225.1", "taxid": 94625, "species_taxid": 94625, "relation_to_type": "suspected-type", "validated": true, "ani": 81.0292, "matched_fragments": 642, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella intermedia", "strain": "strain=LMG 3301", "accession": "GCA_000182645.1", "taxid": 94625, "species_taxid": 94625, "relation_to_type": "suspected-type", "validated": true, "ani": 80.9536, "matched_fragments": 655, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella haematophila", "strain": "strain=CCUG 38531", "accession": "GCA_005938105.1", "taxid": 419474, "species_taxid": 419474, "relation_to_type": "type", "validated": true, "ani": 80.8073, "matched_fragments": 674, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella tritici", "strain": "strain=LMG 18957", "accession": "GCA_008932295.1", "taxid": 94626, "species_taxid": 94626, "relation_to_type": "type", "validated": true, "ani": 80.8065, "matched_fragments": 632, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella pituitosa", "strain": "strain=CCUG 50899", "accession": "GCA_003049685.2", "taxid": 571256, "species_taxid": 571256, "relation_to_type": "type", "validated": true, "ani": 80.1714, "matched_fragments": 637, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella pituitosa", "strain": "strain=CCUG 50899", "accession": "GCA_008801705.1", "taxid": 571256, "species_taxid": 571256, "relation_to_type": "type", "validated": true, "ani": 80.139, "matched_fragments": 632, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ochrobactrum] quorumnocens", "strain": "strain=A44", "accession": "GCA_002278035.1", "taxid": 271865, "species_taxid": 271865, "relation_to_type": "type", "validated": true, "ani": 79.7246, "matched_fragments": 621, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brucella rhizosphaerae", "strain": "strain=PR17", "accession": "GCA_002252475.1", "taxid": 571254, "species_taxid": 571254, "relation_to_type": "type", "validated": true, "ani": 79.6494, "matched_fragments": 597, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium zhangyense", "strain": "strain=CGMCC 1.15528", "accession": "GCA_011045115.1", "taxid": 1776730, "species_taxid": 1776730, "relation_to_type": "type", "validated": true, "ani": 77.6952, "matched_fragments": 291, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium pellucidum", "strain": "strain=BT25", "accession": "GCA_013327855.1", "taxid": 2740464, "species_taxid": 2740464, "relation_to_type": "type", "validated": true, "ani": 77.5582, "matched_fragments": 254, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudochrobactrum algeriensis", "strain": "", "accession": "GCA_907164595.1", "taxid": 2834768, "species_taxid": 2834768, "relation_to_type": "type", "validated": true, "ani": 77.4976, "matched_fragments": 276, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oricola indica", "strain": "strain=JL-62", "accession": "GCA_019966595.1", "taxid": 2872591, "species_taxid": 2872591, "relation_to_type": "type", "validated": true, "ani": 77.3816, "matched_fragments": 177, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium comanense", "strain": "strain=3P27G6", "accession": "GCA_005503535.1", "taxid": 2502215, "species_taxid": 2502215, "relation_to_type": "type", "validated": true, "ani": 77.3267, "matched_fragments": 270, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium camelthorni", "strain": "strain=CCNWXJ 40-4", "accession": "GCA_011045125.1", "taxid": 475069, "species_taxid": 475069, "relation_to_type": "type", "validated": true, "ani": 77.2079, "matched_fragments": 233, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium onobrychidis", "strain": "strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, "relation_to_type": "type", "validated": true, "ani": 77.1734, "matched_fragments": 249, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas endophytica", "strain": "strain=KCTC 52296", "accession": "GCA_024105745.1", "taxid": 1522175, "species_taxid": 1522175, "relation_to_type": "type", "validated": true, "ani": 76.6952, "matched_fragments": 165, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003149535.1", "gtdb_species": "s__Falsochrobactrum shanghaiense", "ani": 100.0, "matched_fragments": 1257, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Falsochrobactrum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_019100495.1", "gtdb_species": "s__Falsochrobactrum sp019100495", "ani": 84.6946, "matched_fragments": 844, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Falsochrobactrum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003550135.1", "gtdb_species": "s__Ochrobactrum_B haematophila_B", "ani": 81.7901, "matched_fragments": 697, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014199265.1", "gtdb_species": "s__Ochrobactrum_C daejeonensis", "ani": 81.1814, "matched_fragments": 632, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.74", "min_intra_species_ani": "99.74", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000007125.1", "gtdb_species": "s__Brucella melitensis", "ani": 81.0471, "matched_fragments": 611, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Brucella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.71", "min_intra_species_ani": "97.51", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.88", "num_clustered_genomes": 877, "status": "-" }, { "accession": "GCA_900473915.1", "gtdb_species": "s__Ochrobactrum sp900473915", "ani": 80.9223, "matched_fragments": 668, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014253075.1", "gtdb_species": "s__JACLZJ01 sp014253075", "ani": 80.8314, "matched_fragments": 635, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__JACLZJ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005938105.1", "gtdb_species": "s__Ochrobactrum_B haematophila", "ani": 80.822, "matched_fragments": 672, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "97.38", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_008932295.1", "gtdb_species": "s__Ochrobactrum tritici", "ani": 80.8109, "matched_fragments": 632, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.18", "min_intra_species_ani": "96.73", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.84", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_014138095.1", "gtdb_species": "s__Ochrobactrum_B sp014138095", "ani": 80.7421, "matched_fragments": 658, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001898995.1", "gtdb_species": "s__63-22 sp001898995", "ani": 80.1947, "matched_fragments": 535, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__63-22", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003049685.1", "gtdb_species": "s__Ochrobactrum_A pituitosa", "ani": 80.1835, "matched_fragments": 637, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "97.05", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.82", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_002278035.1", "gtdb_species": "s__Ochrobactrum_A quorumnocens", "ani": 79.7229, "matched_fragments": 622, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.19", "min_intra_species_ani": "96.78", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.82", "num_clustered_genomes": 5, "status": "-" } ] }