{ "type": "genome", "identifier": "GCF_003150835.1", "organism": "Phenylobacterium parvum", "title": "Phenylobacterium parvum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003150835.1", "bioproject": "PRJNA224116", "biosample": "SAMN09212968", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2201350", "species_taxid": "2201350", "organism_name": "Phenylobacterium parvum", "infraspecific_name": "strain=HYN0004", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/24", "asm_name": "ASM315083v1", "asm_submitter": "Korea University", "gbrs_paired_asm": "GCA_003150835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/150/835/GCF_003150835.1_ASM315083v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2828535", "genome_size_ungapped": "2828535", "gc_percent": "70.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003150835.1-RS_2024_04_05", "annotation_date": "2024-04-05", "total_gene_count": "2694", "protein_coding_gene_count": "2633", "non_coding_gene_count": "51", "pubmed_id": "30714893" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-24", "dateModified": "2018-05-24", "datePublished": "2018-05-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Phenylobacterium parvum" ], "sample_taxid": [ "2201350" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.763 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2828535", "Number of Sequences": "1", "Longest Sequences (bp)": "2828535", "N50 (bp)": "2828535", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.9", "Number of CDSs": "2665", "Average Protein Length": "328.8", "Coding Ratio (%)": "92.9", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Phenylobacterium parvum", "strain": "strain=HYN0004", "accession": "GCA_003150835.1", "taxid": 2201350, "species_taxid": 2201350, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 942, "total_fragments": 942, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Phenylobacterium aquaticum", "strain": "strain=KACC 18306", "accession": "GCA_022695515.1", "taxid": 1763816, "species_taxid": 1763816, "relation_to_type": "type", "validated": true, "ani": 80.2327, "matched_fragments": 545, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium hankyongense", "strain": "strain=HKS-05", "accession": "GCA_003254505.1", "taxid": 1813876, "species_taxid": 1813876, "relation_to_type": "type", "validated": true, "ani": 80.0112, "matched_fragments": 473, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium glaciei", "strain": "strain=20VBR1", "accession": "GCA_016772415.2", "taxid": 2803784, "species_taxid": 2803784, "relation_to_type": "type", "validated": true, "ani": 79.9496, "matched_fragments": 541, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium soli", "strain": "strain=LX32", "accession": "GCA_003254475.1", "taxid": 2170551, "species_taxid": 2170551, "relation_to_type": "type", "validated": true, "ani": 79.5933, "matched_fragments": 491, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium zucineum", "strain": "strain=HLK1", "accession": "GCA_000017265.1", "taxid": 284016, "species_taxid": 284016, "relation_to_type": "type", "validated": true, "ani": 79.5308, "matched_fragments": 514, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium haematophilum", "strain": "strain=DSM 21793", "accession": "GCA_014196295.1", "taxid": 98513, "species_taxid": 98513, "relation_to_type": "type", "validated": true, "ani": 79.3564, "matched_fragments": 462, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium kunshanense", "strain": "strain=BUT-10", "accession": "GCA_003254525.1", "taxid": 1445034, "species_taxid": 1445034, "relation_to_type": "type", "validated": true, "ani": 79.2615, "matched_fragments": 458, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter rhizosphaerae", "strain": "strain=KCTC 52515", "accession": "GCA_010977555.1", "taxid": 2010972, "species_taxid": 2010972, "relation_to_type": "type", "validated": true, "ani": 78.8738, "matched_fragments": 420, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter soli", "strain": "strain=Ji-3-8", "accession": "GCA_011045195.1", "taxid": 2708539, "species_taxid": 2708539, "relation_to_type": "type", "validated": true, "ani": 78.5548, "matched_fragments": 413, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter segnis", "strain": "strain=TK0059", "accession": "GCA_003015125.1", "taxid": 88688, "species_taxid": 88688, "relation_to_type": "type", "validated": true, "ani": 78.5528, "matched_fragments": 399, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter segnis", "strain": "strain=ATCC 21756", "accession": "GCA_000092285.1", "taxid": 88688, "species_taxid": 88688, "relation_to_type": "type", "validated": true, "ani": 78.5488, "matched_fragments": 400, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter vibrioides", "strain": "strain=DSM 9893", "accession": "GCA_002858865.1", "taxid": 155892, "species_taxid": 155892, "relation_to_type": "type", "validated": true, "ani": 78.4111, "matched_fragments": 372, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas guildfordensis", "strain": "strain=Sa3CVA3", "accession": "GCA_014836405.1", "taxid": 2762241, "species_taxid": 2762241, "relation_to_type": "type", "validated": true, "ani": 77.8073, "matched_fragments": 250, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 76.4707, "matched_fragments": 214, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vineibacter terrae", "strain": "strain=CC-CFT640", "accession": "GCA_008039615.1", "taxid": 2586908, "species_taxid": 2586908, "relation_to_type": "type", "validated": true, "ani": 76.1741, "matched_fragments": 191, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003150835.1", "gtdb_species": "s__Phenylobacterium parvum", "ani": 100.0, "matched_fragments": 942, "total_fragments": 942, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Phenylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_903842425.1", "gtdb_species": "s__Phenylobacterium sp903842425", "ani": 87.4713, "matched_fragments": 577, "total_fragments": 942, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Phenylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903933475.1", "gtdb_species": "s__Phenylobacterium sp903933475", "ani": 85.2368, "matched_fragments": 635, "total_fragments": 942, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Phenylobacterium", "parvum" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }