{ "type": "genome", "identifier": "GCF_003151135.1", "organism": "Abyssibacter profundi", "title": "Abyssibacter profundi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ocean University of China", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003151135.1", "bioproject": "PRJNA224116", "biosample": "SAMN09010082", "wgs_master": "QEQK00000000.1", "refseq_category": "reference genome", "taxid": "2182787", "species_taxid": "2182787", "organism_name": "Abyssibacter profundi", "infraspecific_name": "strain=OUC007", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/24", "asm_name": "ASM315113v1", "asm_submitter": "Ocean University of China", "gbrs_paired_asm": "GCA_003151135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/151/135/GCF_003151135.1_ASM315113v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3741513", "genome_size_ungapped": "3741513", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "51", "contig_count": "51", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003151135.1-RS_2024_08_05", "annotation_date": "2024-08-05", "total_gene_count": "3431", "protein_coding_gene_count": "3346", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-24", "dateModified": "2018-05-24", "datePublished": "2018-05-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Abyssibacter profundi" ], "sample_taxid": [ "2182787" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Northern Mariana Islands: Mariana Trench" ], "sample_host_location_id": [], "data_size": "1.050 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3741513", "Number of Sequences": "51", "Longest Sequences (bp)": "406482", "N50 (bp)": "251876", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.1", "Number of CDSs": "3340", "Average Protein Length": "340.5", "Coding Ratio (%)": "91.2", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Abyssibacter profundi", "strain": "strain=OUC007", "accession": "GCA_003151135.1", "taxid": 2182787, "species_taxid": 2182787, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1227, "total_fragments": 1228, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Oceanococcus atlanticus", "strain": "strain=22II-S10r2", "accession": "GCA_002088235.1", "taxid": 1317117, "species_taxid": 1317117, "relation_to_type": "type", "validated": true, "ani": 77.0464, "matched_fragments": 117, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinisphaera japonica", "strain": "strain=YTM-1", "accession": "GCA_003788585.1", "taxid": 1304270, "species_taxid": 1304270, "relation_to_type": "type", "validated": true, "ani": 76.7139, "matched_fragments": 67, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio halophilus", "strain": "strain=HL17", "accession": "GCA_001995255.1", "taxid": 252474, "species_taxid": 252474, "relation_to_type": "type", "validated": true, "ani": 76.6681, "matched_fragments": 58, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nevskia soli", "strain": "strain=DSM 19509", "accession": "GCA_000711955.1", "taxid": 418856, "species_taxid": 418856, "relation_to_type": "type", "validated": true, "ani": 76.5321, "matched_fragments": 131, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinisphaera orenii", "strain": "strain=MK-B5", "accession": "GCA_003788635.1", "taxid": 856731, "species_taxid": 856731, "relation_to_type": "type", "validated": true, "ani": 76.4814, "matched_fragments": 83, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylococcus geothermalis", "strain": "strain=IM1", "accession": "GCA_012769535.1", "taxid": 2681310, "species_taxid": 2681310, "relation_to_type": "type", "validated": true, "ani": 76.4278, "matched_fragments": 57, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalbus denitrificans", "strain": "strain=DSM 26407", "accession": "GCA_003337735.1", "taxid": 547122, "species_taxid": 547122, "relation_to_type": "type", "validated": true, "ani": 76.3847, "matched_fragments": 77, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinisphaera halophila", "strain": "strain=YIM 95161", "accession": "GCA_003732545.1", "taxid": 1304158, "species_taxid": 1304158, "relation_to_type": "type", "validated": true, "ani": 76.3396, "matched_fragments": 92, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solimonas soli", "strain": "strain=DSM 21787", "accession": "GCA_000474945.1", "taxid": 413479, "species_taxid": 413479, "relation_to_type": "type", "validated": true, "ani": 76.2913, "matched_fragments": 99, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas citri", "strain": "strain=CFBP7112", "accession": "GCA_002218265.1", "taxid": 346, "species_taxid": 346, 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"matched_fragments": 75, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas citri", "strain": "strain=LMG872", "accession": "GCA_020011215.1", "taxid": 346, "species_taxid": 346, "relation_to_type": "pathovar", "validated": true, "ani": 76.2034, "matched_fragments": 66, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteibacter yeojuensis", "strain": "strain=DSM 17673", "accession": "GCA_011742875.1", "taxid": 345309, "species_taxid": 345309, "relation_to_type": "type", "validated": true, "ani": 76.1443, "matched_fragments": 53, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solimonas variicoloris", "strain": "strain=DSM 15731", "accession": "GCA_000382285.1", "taxid": 254408, "species_taxid": 254408, "relation_to_type": "type", "validated": true, "ani": 76.0886, "matched_fragments": 113, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 76.0633, "matched_fragments": 93, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inmirania thermothiophila", "strain": "strain=DSM 100275", "accession": "GCA_003751635.1", "taxid": 1750597, "species_taxid": 1750597, "relation_to_type": "type", "validated": true, "ani": 75.9691, "matched_fragments": 57, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aeruginosa", "strain": "strain=DSM 50071", "accession": "GCA_024169805.1", "taxid": 287, "species_taxid": 287, "relation_to_type": "type", "validated": true, "ani": 75.8913, "matched_fragments": 76, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 75.8536, "matched_fragments": 64, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azotobacter chroococcum", "strain": "strain=ATCC 9043", "accession": "GCA_004327905.1", "taxid": 353, "species_taxid": 353, "relation_to_type": "type", "validated": true, "ani": 75.7973, "matched_fragments": 90, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azotobacter chroococcum", "strain": "strain=DSM 2286", "accession": "GCA_004339665.1", "taxid": 353, "species_taxid": 353, "relation_to_type": "type", "validated": true, "ani": 75.7916, "matched_fragments": 90, "total_fragments": 1228, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax venustensis", "strain": "strain=ISO4", "accession": 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