{ "type": "genome", "identifier": "GCF_003172955.1", "organism": "Micromonospora acroterricola", "title": "Micromonospora acroterricola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Newcastle University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003172955.1", "bioproject": "PRJNA224116", "biosample": "SAMN09227741", "wgs_master": "QGKR00000000.1", "refseq_category": "reference genome", "taxid": "2202421", "species_taxid": "2202421", "organism_name": "Micromonospora acroterricola", "infraspecific_name": "strain=5R2A7", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/26", "asm_name": "ASM317295v1", "asm_submitter": "Newcastle University", "gbrs_paired_asm": "GCA_003172955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/172/955/GCF_003172955.1_ASM317295v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6509818", "genome_size_ungapped": "6509818", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "369", "contig_count": "369", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003172955.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "6181", "protein_coding_gene_count": "5891", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-26", "dateModified": "2018-05-26", "datePublished": "2018-05-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora acroterricola" ], "sample_taxid": [ "2202421" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chile: Cerro Chajnantor" ], "sample_host_location_id": [], "data_size": "1.751 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6509818", "Number of Sequences": "369", "Longest Sequences (bp)": "154661", "N50 (bp)": "30943", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.3", "Number of CDSs": "5809", "Average Protein Length": "315.1", "Coding Ratio (%)": "84.4", "Number of rRNAs": "3", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1959, "total_fragments": 1976, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Micromonospora cremea", "strain": "strain=DSM 45599", "accession": "GCA_900143515.1", "taxid": 709881, "species_taxid": 709881, "relation_to_type": "type", "validated": true, "ani": 92.068, "matched_fragments": 1600, "total_fragments": 1976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora coriariae", "strain": "strain=DSM 44875", "accession": "GCA_900091455.1", "taxid": 285665, "species_taxid": 285665, "relation_to_type": "type", "validated": true, "ani": 91.5746, "matched_fragments": 1604, "total_fragments": 1976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora orduensis", "strain": "strain=S2509", "accession": "GCA_006228125.1", "taxid": 1420891, "species_taxid": 1420891, "relation_to_type": "type", "validated": true, "ani": 89.4813, "matched_fragments": 1404, "total_fragments": 1976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora parathelypteridis", "strain": "strain=CGMCC 4.7347", "accession": "GCA_014646315.1", "taxid": 1839617, "species_taxid": 1839617, "relation_to_type": "type", "validated": true, "ani": 89.2613, "matched_fragments": 1554, "total_fragments": 1976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora jinlongensis", "strain": "strain=DSM 45876", "accession": "GCA_013410645.1", "taxid": 1287877, "species_taxid": 1287877, "relation_to_type": "type", "validated": true, "ani": 89.2327, "matched_fragments": 1562, "total_fragments": 1976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora parathelypteridis", "strain": "strain=DSM 103125", "accession": "GCA_014201145.1", "taxid": 1839617, "species_taxid": 1839617, "relation_to_type": "type", "validated": true, "ani": 89.2083, "matched_fragments": 1574, "total_fragments": 1976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora saelicesensis", "strain": "strain=DSM 44871", "accession": "GCA_900091575.1", "taxid": 285676, "species_taxid": 285676, "relation_to_type": "type", "validated": true, "ani": 89.0812, "matched_fragments": 1581, "total_fragments": 1976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora luteifusca", "strain": "strain=DSM 100204", "accession": "GCA_016907275.1", "taxid": 709860, "species_taxid": 709860, "relation_to_type": "type", "validated": true, "ani": 88.9449, "matched_fragments": 1537, "total_fragments": 1976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora arida", "strain": "strain=LB32", "accession": "GCA_003857035.1", "taxid": 2203715, "species_taxid": 2203715, "relation_to_type": "type", "validated": true, "ani": 88.7616, "matched_fragments": 1481, "total_fragments": 1976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ureilytica", "strain": "strain=DSM 101692", "accession": "GCA_015751765.1", "taxid": 709868, "species_taxid": 709868, "relation_to_type": "type", "validated": true, "ani": 88.7363, "matched_fragments": 1509, "total_fragments": 1976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora profundi", "strain": "strain=DSM 45981", "accession": "GCA_011927785.1", "taxid": 1420889, "species_taxid": 1420889, "relation_to_type": "type", "validated": true, "ani": 88.268, "matched_fragments": 1428, "total_fragments": 1976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 86.4962, "matched_fragments": 1068, "total_fragments": 1976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 84.6624, "matched_fragments": 1286, "total_fragments": 1976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 84.4385, "matched_fragments": 1275, "total_fragments": 1976, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phaseoli", "strain": "strain=NBRC 110907", "accession": "GCA_016863675.1", "taxid": 1144548, "species_taxid": 1144548, "relation_to_type": "type", "validated": true, "ani": 83.8135, "matched_fragments": 1181, "total_fragments": 1976, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003172955.1", "gtdb_species": "s__Micromonospora sp003172955", "ani": 100.0, "matched_fragments": 1958, "total_fragments": 1976, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900143515.1", "gtdb_species": "s__Micromonospora cremea", "ani": 92.0898, "matched_fragments": 1598, "total_fragments": 1976, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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