{ "type": "genome", "identifier": "GCF_003173735.1", "organism": "Methylobacterium radiodurans", "title": "Methylobacterium radiodurans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003173735.1", "bioproject": "PRJNA224116", "biosample": "SAMN09235362", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2202828", "species_taxid": "2202828", "organism_name": "Methylobacterium radiodurans", "infraspecific_name": "strain=17Sr1-43", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/29", "asm_name": "ASM317373v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_003173735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/173/735/GCF_003173735.1_ASM317373v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5539695", "genome_size_ungapped": "5539695", "gc_percent": "70.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003173735.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "5267", "protein_coding_gene_count": "5086", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-29", "dateModified": "2018-05-29", "datePublished": "2018-05-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium radiodurans" ], "sample_taxid": [ "2202828" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Seoul" ], "sample_host_location_id": [], "data_size": "1.492 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5539695", "Number of Sequences": "1", "Longest Sequences (bp)": "5539695", "N50 (bp)": "5539695", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.4", "Number of CDSs": "5291", "Average Protein Length": "300.5", "Coding Ratio (%)": "86.1", "Number of rRNAs": "18", "Number of tRNAs": "71", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylobacterium radiodurans", "strain": "strain=17Sr1-43", "accession": "GCA_003173735.1", "taxid": 2202828, "species_taxid": 2202828, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1844, "total_fragments": 1846, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methylobacterium hispanicum", "strain": "strain=DSM 16372", "accession": "GCA_022179285.1", "taxid": 270350, "species_taxid": 270350, "relation_to_type": "type", "validated": true, "ani": 90.8246, "matched_fragments": 1377, "total_fragments": 1846, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium gregans", "strain": "strain=NBRC 103626", "accession": "GCA_022179245.1", "taxid": 374424, "species_taxid": 374424, "relation_to_type": "type", "validated": true, "ani": 90.5306, "matched_fragments": 1313, "total_fragments": 1846, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium dankookense", "strain": "strain=DSM 22415", "accession": "GCA_022179165.1", "taxid": 560405, "species_taxid": 560405, "relation_to_type": "type", "validated": true, "ani": 86.3449, "matched_fragments": 1184, "total_fragments": 1846, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium dankookense", "strain": "strain=SW08-7", "accession": "GCA_902141855.1", "taxid": 560405, "species_taxid": 560405, "relation_to_type": "type", "validated": true, "ani": 86.3394, "matched_fragments": 1247, "total_fragments": 1846, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium symbioticum", "strain": "strain=SB0023/3", "accession": "GCA_902141845.1", "taxid": 2584084, "species_taxid": 2584084, "relation_to_type": "type", "validated": true, "ani": 85.7045, "matched_fragments": 1178, "total_fragments": 1846, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oxalidis", "strain": "strain=DSM 24028", "accession": "GCA_022179505.1", "taxid": 944322, "species_taxid": 944322, "relation_to_type": "type", "validated": true, "ani": 83.6662, "matched_fragments": 1023, "total_fragments": 1846, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium tardum", "strain": "strain=NBRC 103632", "accession": "GCA_022179585.1", "taxid": 374432, "species_taxid": 374432, "relation_to_type": "type", "validated": true, "ani": 82.559, "matched_fragments": 1093, "total_fragments": 1846, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium longum", "strain": "strain=DSM 23933", "accession": "GCA_022179385.1", "taxid": 767694, "species_taxid": 767694, "relation_to_type": "type", "validated": true, "ani": 82.2007, "matched_fragments": 1058, "total_fragments": 1846, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium archetypum", "strain": "strain=WSM 1744", "accession": "GCA_013114835.1", "taxid": 2721160, "species_taxid": 2721160, "relation_to_type": "type", "validated": true, "ani": 76.9617, "matched_fragments": 304, "total_fragments": 1846, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas citri", "strain": "strain=RRHST34", "accession": "GCA_019429485.1", "taxid": 2862499, "species_taxid": 2862499, "relation_to_type": "type", "validated": true, "ani": 76.0029, "matched_fragments": 313, "total_fragments": 1846, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003173735.1", "gtdb_species": "s__Methylobacterium radiodurans", "ani": 100.0, "matched_fragments": 1845, "total_fragments": 1846, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_902141855.1", "gtdb_species": 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