{ "tc_result": [ { "organism_name": "Frischella perrara", "strain": "strain=DSM 104328", "accession": "GCA_003182045.1", "taxid": 1267021, "species_taxid": 1267021, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 829, "total_fragments": 832, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Frischella perrara", "strain": "strain=PEB0191", "accession": "GCA_000807275.1", "taxid": 1267021, "species_taxid": 1267021, "relation_to_type": "type", "validated": true, "ani": 99.9977, "matched_fragments": 831, "total_fragments": 832, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gilliamella apicola", "strain": "strain=wkB1", "accession": "GCA_000599985.1", "taxid": 1196095, "species_taxid": 1196095, "relation_to_type": "suspected-type", "validated": true, "ani": 79.9819, "matched_fragments": 190, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gilliamella apicola", "strain": "strain=DSM 104097", "accession": "GCA_003201455.1", "taxid": 1196095, "species_taxid": 1196095, "relation_to_type": "suspected-type", "validated": true, "ani": 79.8002, "matched_fragments": 195, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frischella japonica", "strain": "strain=Ac13", "accession": "GCA_014489845.1", "taxid": 2741544, "species_taxid": 2741544, "relation_to_type": "type", "validated": true, "ani": 79.3451, "matched_fragments": 376, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gilliamella apis", "strain": "strain=NO3", "accession": "GCA_002142155.1", "taxid": 1970738, "species_taxid": 1970738, "relation_to_type": "type", "validated": true, "ani": 78.9601, "matched_fragments": 189, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gilliamella bombicola", "strain": "strain=R-53248", "accession": "GCA_900094945.1", "taxid": 1798182, "species_taxid": 1798182, "relation_to_type": "type", "validated": true, "ani": 78.3968, "matched_fragments": 152, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Orbus hercynius", "strain": "strain=DSM 22228", "accession": "GCA_003634275.1", "taxid": 593135, "species_taxid": 593135, "relation_to_type": "type", "validated": true, "ani": 78.2558, "matched_fragments": 167, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gilliamella intestini", "strain": "strain=R-53144", "accession": "GCA_900094935.1", "taxid": 1798183, "species_taxid": 1798183, "relation_to_type": "type", "validated": true, "ani": 77.9753, "matched_fragments": 171, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000807275.1", "gtdb_species": "s__Frischella perrara", "ani": 99.9977, "matched_fragments": 831, "total_fragments": 832, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Frischella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.14", "min_intra_species_ani": "98.29", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_000599985.1", "gtdb_species": "s__Gilliamella apicola", "ani": 79.9984, "matched_fragments": 189, "total_fragments": 832, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.05", "min_intra_species_ani": "97.62", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 21, "status": "-" }, { "accession": "GCF_014489845.1", "gtdb_species": "s__Frischella japonica", "ani": 79.3209, "matched_fragments": 378, "total_fragments": 832, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Frischella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900094945.1", "gtdb_species": "s__Gilliamella bombicola", "ani": 78.4258, "matched_fragments": 152, "total_fragments": 832, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.14", "min_intra_species_ani": "97.05", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001690655.1", "gtdb_species": "s__Gilliamella apicola_P", "ani": 78.3549, "matched_fragments": 161, "total_fragments": 832, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900103255.1", "gtdb_species": "s__Gilliamella bombi", "ani": 78.3057, "matched_fragments": 168, "total_fragments": 832, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.07", "min_intra_species_ani": "95.43", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.80", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_009795845.1", "gtdb_species": "s__Gilliamella sp009795845", "ani": 78.2978, "matched_fragments": 160, "total_fragments": 832, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003634275.1", "gtdb_species": "s__Orbus hercynius", "ani": 78.2946, "matched_fragments": 164, "total_fragments": 832, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Orbus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001693745.1", "gtdb_species": "s__Gilliamella apicola_E", "ani": 78.2369, "matched_fragments": 164, "total_fragments": 832, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.90", "min_intra_species_ani": "97.90", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001690355.1", "gtdb_species": "s__Gilliamella apicola_A", "ani": 78.2217, "matched_fragments": 158, "total_fragments": 832, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.35", "min_intra_species_ani": "99.00", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001690185.1", "gtdb_species": "s__Gilliamella apicola_I", "ani": 78.1469, "matched_fragments": 174, "total_fragments": 832, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001690595.1", "gtdb_species": "s__Gilliamella apicola_M", "ani": 78.0724, "matched_fragments": 172, "total_fragments": 832, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001690525.1", "gtdb_species": "s__Gilliamella apicola_H", "ani": 77.9694, "matched_fragments": 171, "total_fragments": 832, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.50", "min_intra_species_ani": "95.50", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001690195.1", "gtdb_species": "s__Gilliamella apicola_L", "ani": 77.9327, "matched_fragments": 175, "total_fragments": 832, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001874625.1", "gtdb_species": "s__Providencia rettgeri_A", "ani": 77.0685, "matched_fragments": 52, "total_fragments": 832, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Providencia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.18", "min_intra_species_ani": "98.88", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 38, "status": "-" } ] }