{ "type": "genome", "identifier": "GCF_003182045.1", "organism": "Frischella perrara", "title": "Frischella perrara", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003182045.1", "bioproject": "PRJNA224116", "biosample": "SAMN08769559", "wgs_master": "QGTI00000000.1", "refseq_category": "na", "taxid": "1267021", "species_taxid": "1267021", "organism_name": "Frischella perrara", "infraspecific_name": "strain=DSM 104328", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/05/31", "asm_name": "ASM318204v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003182045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/182/045/GCF_003182045.1_ASM318204v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2605187", "genome_size_ungapped": "2604608", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "67", "contig_count": "67", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003182045.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "2333", "protein_coding_gene_count": "2254", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-05-31", "dateModified": "2018-05-31", "datePublished": "2018-05-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Frischella perrara" ], "sample_taxid": [ "1267021" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.730 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2605187", "Number of Sequences": "67", "Longest Sequences (bp)": "310697", "N50 (bp)": "154322", "Gap Ratio (%)": "0.022225", "GCcontent (%)": "34.0", "Number of CDSs": "2215", "Average Protein Length": "325.4", "Coding Ratio (%)": "83.0", "Number of rRNAs": "4", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Frischella perrara", "strain": "strain=DSM 104328", "accession": "GCA_003182045.1", "taxid": 1267021, "species_taxid": 1267021, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 829, "total_fragments": 832, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Frischella perrara", "strain": "strain=PEB0191", "accession": "GCA_000807275.1", "taxid": 1267021, "species_taxid": 1267021, "relation_to_type": "type", "validated": true, "ani": 99.9977, "matched_fragments": 831, "total_fragments": 832, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gilliamella apicola", "strain": "strain=wkB1", "accession": "GCA_000599985.1", "taxid": 1196095, "species_taxid": 1196095, "relation_to_type": "suspected-type", "validated": true, "ani": 79.9819, "matched_fragments": 190, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gilliamella apicola", "strain": "strain=DSM 104097", "accession": "GCA_003201455.1", "taxid": 1196095, "species_taxid": 1196095, "relation_to_type": "suspected-type", "validated": true, "ani": 79.8002, "matched_fragments": 195, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"GCA_003634275.1", "taxid": 593135, "species_taxid": 593135, "relation_to_type": "type", "validated": true, "ani": 78.2558, "matched_fragments": 167, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gilliamella intestini", "strain": "strain=R-53144", "accession": "GCA_900094935.1", "taxid": 1798183, "species_taxid": 1798183, "relation_to_type": "type", "validated": true, "ani": 77.9753, "matched_fragments": 171, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000807275.1", "gtdb_species": "s__Frischella perrara", "ani": 99.9977, "matched_fragments": 831, "total_fragments": 832, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Frischella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.14", 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"status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.243, "doubling_h": null, "growth_tmp": 35.0, "optimum_tmp": 37.0, "optimum_ph": 7.0, "genome_size": 2677823.5, "gc_content": 34.11, "coding_genes": 2248.0, "rRNA16S_genes": 4.0, "tRNA_genes": 53.0, "gram_stain": 0.0, "sporulation": null, "motility": null, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Frischella", "perrara" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }