{
    "type": "genome",
    "identifier": "GCF_003182135.1",
    "organism": "Nocardia neocaledoniensis",
    "title": "Nocardia neocaledoniensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003182135.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09074699",
        "wgs_master": "QGTL00000000.1",
        "refseq_category": "reference genome",
        "taxid": "236511",
        "species_taxid": "236511",
        "organism_name": "Nocardia neocaledoniensis",
        "infraspecific_name": "strain=DSM 44717",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/05/31",
        "asm_name": "ASM318213v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_003182135.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/182/135/GCF_003182135.1_ASM318213v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7323073",
        "genome_size_ungapped": "7322646",
        "gc_percent": "69.500000",
        "replicon_count": "0",
        "scaffold_count": "29",
        "contig_count": "29",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003182135.1-RS_2024_04_22",
        "annotation_date": "2024-04-22",
        "total_gene_count": "6840",
        "protein_coding_gene_count": "6713",
        "non_coding_gene_count": "66",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-05-31",
    "dateModified": "2018-05-31",
    "datePublished": "2018-05-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nocardia neocaledoniensis"
        ],
        "sample_taxid": [
            "236511"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.972 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 2.78,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7323073",
        "Number of Sequences": "29",
        "Longest Sequences (bp)": "948687",
        "N50 (bp)": "433497",
        "Gap Ratio (%)": "0.005831",
        "GCcontent (%)": "69.7",
        "Number of CDSs": "6838",
        "Average Protein Length": "324.5",
        "Coding Ratio (%)": "90.9",
        "Number of rRNAs": "2",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Nocardia neocaledoniensis",
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                "accession": "GCA_003182135.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
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                "total_fragments": 2427,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Nocardia neocaledoniensis",
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                "accession": "GCA_007990735.1",
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                "ani_threshold": 95,
                "status": "conclusive"
            },
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                "accession": "GCA_005863255.1",
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                "status": "below_threshold"
            },
            {
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                "relation_to_type": "suspected-type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia rhizosphaerihabitans",
                "strain": "strain=CGMCC 4.7329",
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                "species_taxid": 1691570,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia asteroides",
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                "accession": "GCA_000308355.2",
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                "species_taxid": 1824,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "matched_fragments": 1802,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 2.78,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_003182135.1",
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                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
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            },
            {
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                "matched_fragments": 1790,
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                "num_clustered_genomes": 5,
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            },
            {
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}