{
    "type": "genome",
    "identifier": "GCF_003182235.1",
    "organism": "Phyllobacterium myrsinacearum",
    "title": "Phyllobacterium myrsinacearum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003182235.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09065088",
        "wgs_master": "QGTP00000000.1",
        "refseq_category": "na",
        "taxid": "28101",
        "species_taxid": "28101",
        "organism_name": "Phyllobacterium myrsinacearum",
        "infraspecific_name": "strain=IAM 13584",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/05/31",
        "asm_name": "ASM318223v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_003182235.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/182/235/GCF_003182235.1_ASM318223v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5420195",
        "genome_size_ungapped": "5419712",
        "gc_percent": "59.500000",
        "replicon_count": "0",
        "scaffold_count": "32",
        "contig_count": "32",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003182235.1-RS_2024_04_30",
        "annotation_date": "2024-04-30",
        "total_gene_count": "5223",
        "protein_coding_gene_count": "5130",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-05-31",
    "dateModified": "2018-05-31",
    "datePublished": "2018-05-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Phyllobacterium myrsinacearum"
        ],
        "sample_taxid": [
            "28101"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.522 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5420195",
        "Number of Sequences": "32",
        "Longest Sequences (bp)": "1095512",
        "N50 (bp)": "326763",
        "Gap Ratio (%)": "0.008911",
        "GCcontent (%)": "59.3",
        "Number of CDSs": "5218",
        "Average Protein Length": "308.1",
        "Coding Ratio (%)": "89.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Phyllobacterium myrsinacearum",
                "strain": "strain=IAM 13584",
                "accession": "GCA_003182235.1",
                "taxid": 28101,
                "species_taxid": 28101,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1789,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Phyllobacterium myrsinacearum",
                "strain": "strain=DSM 5892",
                "accession": "GCA_002980555.1",
                "taxid": 28101,
                "species_taxid": 28101,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9994,
                "matched_fragments": 1788,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Phyllobacterium myrsinacearum",
                "strain": "strain=DSM 5892",
                "accession": "GCA_004217385.1",
                "taxid": 28101,
                "species_taxid": 28101,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9987,
                "matched_fragments": 1790,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Phyllobacterium calauticae",
                "strain": "strain=R2-JL",
                "accession": "GCA_019991125.1",
                "taxid": 2817027,
                "species_taxid": 2817027,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.6322,
                "matched_fragments": 1506,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phyllobacterium zundukense",
                "strain": "strain=Tri-48; RCAM 03910",
                "accession": "GCA_002764115.1",
                "taxid": 1867719,
                "species_taxid": 1867719,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7683,
                "matched_fragments": 892,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phyllobacterium sophorae",
                "strain": "strain=CCBAU 03422",
                "accession": "GCA_003010965.1",
                "taxid": 1520277,
                "species_taxid": 1520277,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2689,
                "matched_fragments": 838,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phyllobacterium brassicacearum",
                "strain": "strain=STM 196",
                "accession": "GCA_003010955.1",
                "taxid": 314235,
                "species_taxid": 314235,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9955,
                "matched_fragments": 813,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium onobrychidis",
                "strain": "strain=OM4",
                "accession": "GCA_024707545.1",
                "taxid": 2775404,
                "species_taxid": 2775404,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9716,
                "matched_fragments": 435,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium comanense",
                "strain": "strain=3P27G6",
                "accession": "GCA_005503535.1",
                "taxid": 2502215,
                "species_taxid": 2502215,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.88,
                "matched_fragments": 493,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brucella pseudogrignonensis",
                "strain": "strain=CCUG 30717",
                "accession": "GCA_002252525.1",
                "taxid": 419475,
                "species_taxid": 419475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7831,
                "matched_fragments": 249,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquibium microcysteis",
                "strain": "strain=NIBR3",
                "accession": "GCA_014495845.1",
                "taxid": 675281,
                "species_taxid": 675281,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7091,
                "matched_fragments": 369,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ciceribacter ferrooxidans",
                "strain": "strain=F8825",
                "accession": "GCA_004137355.1",
                "taxid": 2509717,
                "species_taxid": 2509717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3648,
                "matched_fragments": 282,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitratireductor arenosus",
                "strain": "strain=CAU 1489",
                "accession": "GCA_009742725.1",
                "taxid": 2682096,
                "species_taxid": 2682096,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3141,
                "matched_fragments": 315,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chelativorans alearense",
                "strain": "strain=UJN715",
                "accession": "GCA_010993735.1",
                "taxid": 2681495,
                "species_taxid": 2681495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.204,
                "matched_fragments": 330,
                "total_fragments": 1793,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002980555.1",
                "gtdb_species": "s__Phyllobacterium myrsinacearum",
                "ani": 99.9994,
                "matched_fragments": 1788,
                "total_fragments": 1793,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Phyllobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.64",
                "min_intra_species_ani": "98.56",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900539805.1",
                "gtdb_species": "s__Phyllobacterium sp900539805",
                "ani": 92.6566,
                "matched_fragments": 1441,
                "total_fragments": 1793,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Phyllobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.69",
                "min_intra_species_ani": "96.69",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014138285.1",
                "gtdb_species": "s__Phyllobacterium myrsinacearum_A",
                "ani": 85.5922,
                "matched_fragments": 1355,
                "total_fragments": 1793,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Phyllobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900104355.1",
                "gtdb_species": "s__Phyllobacterium sp900104355",
                "ani": 84.1373,
                "matched_fragments": 1274,
                "total_fragments": 1793,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Phyllobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900472835.1",
                "gtdb_species": "s__Phyllobacterium sp900472835",
                "ani": 84.0403,
                "matched_fragments": 1249,
                "total_fragments": 1793,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Phyllobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.91",
                "min_intra_species_ani": "98.56",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 30,
                "status": "-"
            },
            {
                "accession": "GCF_014189505.1",
                "gtdb_species": "s__Phyllobacterium sp014189505",
                "ani": 82.745,
                "matched_fragments": 1133,
                "total_fragments": 1793,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Phyllobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002252525.1",
                "gtdb_species": "s__Ochrobactrum_A pseudogrignonensis",
                "ani": 77.7969,
                "matched_fragments": 248,
                "total_fragments": 1793,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.50",
                "min_intra_species_ani": "96.15",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 34,
                "status": "-"
            },
            {
                "accession": "GCF_002294995.1",
                "gtdb_species": "s__Mesorhizobium sp002294995",
                "ani": 77.7186,
                "matched_fragments": 440,
                "total_fragments": 1793,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018798825.1",
                "gtdb_species": "s__Ochrobactrum_A sp018798825",
                "ani": 77.5518,
                "matched_fragments": 253,
                "total_fragments": 1793,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010993735.1",
                "gtdb_species": "s__Chelativorans alearense",
                "ani": 77.2056,
                "matched_fragments": 332,
                "total_fragments": 1793,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Chelativorans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.041,
        "cell_length": 0.342,
        "doubling_h": null,
        "growth_tmp": 26.0,
        "optimum_tmp": 28.0,
        "optimum_ph": 7.0,
        "genome_size": 4677947.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Phyllobacterium",
        "myrsinacearum"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}