{
    "type": "genome",
    "identifier": "GCF_003183825.1",
    "organism": "Gordonia terrae",
    "title": "Gordonia terrae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Pittsburgh",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003183825.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09254177",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "2055",
        "species_taxid": "2055",
        "organism_name": "Gordonia terrae",
        "infraspecific_name": "strain=NRRL B-16283",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/06/03",
        "asm_name": "ASM318382v1",
        "asm_submitter": "University of Pittsburgh",
        "gbrs_paired_asm": "GCA_003183825.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/183/825/GCF_003183825.1_ASM318382v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5708950",
        "genome_size_ungapped": "5708950",
        "gc_percent": "68.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003183825.1-RS_2024_03_29",
        "annotation_date": "2024-03-29",
        "total_gene_count": "5102",
        "protein_coding_gene_count": "4998",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-06-03",
    "dateModified": "2018-06-03",
    "datePublished": "2018-06-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gordonia terrae"
        ],
        "sample_taxid": [
            "2055"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.549 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5708950",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "5708950",
        "N50 (bp)": "5708950",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.8",
        "Number of CDSs": "5123",
        "Average Protein Length": "339.9",
        "Coding Ratio (%)": "91.5",
        "Number of rRNAs": "9",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Gordonia terrae",
                "strain": "strain=NRRL B-16283",
                "accession": "GCA_003183825.1",
                "taxid": 2055,
                "species_taxid": 2055,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1902,
                "total_fragments": 1902,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Gordonia terrae",
                "strain": "strain=3612",
                "accession": "GCA_001698225.1",
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                "species_taxid": 2055,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9943,
                "matched_fragments": 1899,
                "total_fragments": 1902,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Gordonia terrae",
                "strain": "strain=NCTC10669",
                "accession": "GCA_901542405.1",
                "taxid": 2055,
                "species_taxid": 2055,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9942,
                "matched_fragments": 1898,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Gordonia terrae",
                "strain": "strain=NRRL B-16283",
                "accession": "GCA_000716975.1",
                "taxid": 2055,
                "species_taxid": 2055,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9751,
                "matched_fragments": 1852,
                "total_fragments": 1902,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Gordonia terrae",
                "strain": "strain=NBRC 100016",
                "accession": "GCA_000248035.2",
                "taxid": 2055,
                "species_taxid": 2055,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.936,
                "matched_fragments": 1834,
                "total_fragments": 1902,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001698225.1",
                "gtdb_species": "s__Gordonia terrae",
                "ani": 99.9943,
                "matched_fragments": 1899,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.37",
                "min_intra_species_ani": "97.67",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002149015.1",
                "gtdb_species": "s__Gordonia lacunae",
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                "matched_fragments": 1573,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000143885.2",
                "gtdb_species": "s__Gordonia sp000143885",
                "ani": 89.5344,
                "matched_fragments": 1520,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.85",
                "min_intra_species_ani": "97.53",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_011290605.1",
                "gtdb_species": "s__Gordonia sp002009645",
                "ani": 88.9805,
                "matched_fragments": 1507,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.70",
                "min_intra_species_ani": "97.37",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCA_014041935.1",
                "gtdb_species": "s__Gordonia sp014041935",
                "ani": 83.3295,
                "matched_fragments": 1217,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.20",
                "min_intra_species_ani": "99.20",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900105725.1",
                "gtdb_species": "s__Gordonia westfalica",
                "ani": 83.1236,
                "matched_fragments": 1274,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000327325.1",
                "gtdb_species": "s__Gordonia rubripertincta",
                "ani": 83.0847,
                "matched_fragments": 1146,
                "total_fragments": 1902,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "98.07",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.29,
        "cell_length": -0.067,
        "doubling_h": null,
        "growth_tmp": 31.5,
        "optimum_tmp": 29.25,
        "optimum_ph": 7.479,
        "genome_size": 5628455.25,
        "gc_content": 67.8,
        "coding_genes": 4947.25,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 46.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Gordonia",
        "terrae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}