{ "type": "genome", "identifier": "GCF_003185895.1", "organism": "Cryobacterium arcticum", "title": "Cryobacterium arcticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003185895.1", "bioproject": "PRJNA224116", "biosample": "SAMN07944245", "wgs_master": "QHLY00000000.1", "refseq_category": "reference genome", "taxid": "670052", "species_taxid": "670052", "organism_name": "Cryobacterium arcticum", "infraspecific_name": "strain=SK-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/04", "asm_name": "ASM318589v1", "asm_submitter": "Institute of Microbiology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_003185895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/185/895/GCF_003185895.1_ASM318589v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4305516", "genome_size_ungapped": "4305516", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003185895.1-RS_2024_05_13", "annotation_date": "2024-05-13", "total_gene_count": "4074", "protein_coding_gene_count": "4002", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-04", "dateModified": "2018-06-04", "datePublished": "2018-06-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Cryobacterium arcticum" ], "sample_taxid": [ "670052" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.173 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4305516", "Number of Sequences": "13", "Longest Sequences (bp)": "2052916", "N50 (bp)": "846838", "Gap Ratio (%)": "0.000139", "GCcontent (%)": "68.0", "Number of CDSs": "4057", "Average Protein Length": "323.0", "Coding Ratio (%)": "91.3", "Number of rRNAs": "4", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cryobacterium arcticum", "strain": "strain=SK-1", "accession": "GCA_003185895.1", "taxid": 670052, "species_taxid": 670052, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1430, "total_fragments": 1430, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cryobacterium soli", "strain": "strain=GCJ02", "accession": "GCA_003611035.1", "taxid": 2220095, "species_taxid": 2220095, "relation_to_type": "type", "validated": true, "ani": 86.0864, "matched_fragments": 1028, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium zongtaii", "strain": "strain=TMN-42", "accession": "GCA_002909375.1", "taxid": 1259217, "species_taxid": 1259217, "relation_to_type": "type", "validated": true, "ani": 85.861, "matched_fragments": 959, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium psychrotolerans", "strain": "strain=CGMCC 1.5382", "accession": "GCA_900101115.1", "taxid": 386301, "species_taxid": 386301, "relation_to_type": "type", "validated": true, "ani": 81.4845, "matched_fragments": 543, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium psychrotolerans", "strain": "strain=CGMCC 1.5382", "accession": "GCA_004564325.1", "taxid": 386301, "species_taxid": 386301, "relation_to_type": "type", "validated": true, "ani": 81.3783, "matched_fragments": 541, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium breve", "strain": "strain=TMT4-23", "accession": "GCA_004402375.1", "taxid": 1259258, "species_taxid": 1259258, "relation_to_type": "type", "validated": true, "ani": 80.8118, "matched_fragments": 595, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium melibiosiphilum", "strain": "strain=Hh39", "accession": "GCA_003602235.1", "taxid": 995039, "species_taxid": 995039, "relation_to_type": "type", "validated": true, "ani": 80.6201, "matched_fragments": 609, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium tepidiphilum", "strain": "strain=NEAU-85", "accession": "GCA_003716325.1", "taxid": 2486026, "species_taxid": 2486026, "relation_to_type": "type", "validated": true, "ani": 80.4406, "matched_fragments": 471, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium levicorallinum", "strain": "strain=GMCC 1.11211", "accession": "GCA_900113585.1", "taxid": 995038, "species_taxid": 995038, "relation_to_type": "type", "validated": true, "ani": 80.1673, "matched_fragments": 515, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microterricola viridarii", "strain": "strain=DSM 21772", "accession": "GCA_900104895.1", "taxid": 412690, "species_taxid": 412690, "relation_to_type": "type", "validated": true, "ani": 80.1361, "matched_fragments": 532, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium ruanii", "strain": "strain=Sr36", "accession": "GCA_004404055.1", "taxid": 1259197, "species_taxid": 1259197, "relation_to_type": "type", "validated": true, "ani": 80.0211, "matched_fragments": 494, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microterricola pindariensis", "strain": "strain=PON 10", "accession": "GCA_002936985.1", "taxid": 478010, "species_taxid": 478010, "relation_to_type": "type", "validated": true, "ani": 79.9543, "matched_fragments": 520, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces mariniharenae", "strain": "strain=NEAU-184", "accession": "GCA_008122505.1", "taxid": 2604423, "species_taxid": 2604423, "relation_to_type": "type", "validated": true, "ani": 78.5669, "matched_fragments": 465, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces cavernae", "strain": "strain=SYSU K20354", "accession": "GCA_021044935.1", "taxid": 2898659, "species_taxid": 2898659, "relation_to_type": "type", "validated": true, "ani": 78.3439, "matched_fragments": 423, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces humatus", "strain": "strain=JCM 14319", "accession": "GCA_021228295.1", "taxid": 279573, "species_taxid": 279573, "relation_to_type": "type", "validated": true, "ani": 78.3095, "matched_fragments": 426, "total_fragments": 1430, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003185895.1", "gtdb_species": "s__Cryobacterium arcticum", "ani": 100.0, "matched_fragments": 1430, "total_fragments": 1430, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002929555.1", "gtdb_species": "s__Cryobacterium sp002929555", "ani": 86.2676, "matched_fragments": 954, "total_fragments": 1430, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004403945.1", "gtdb_species": "s__Cryobacterium sp004403945", "ani": 86.2515, "matched_fragments": 984, "total_fragments": 1430, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001679725.1", "gtdb_species": "s__Cryobacterium arcticum_A", "ani": 86.2126, "matched_fragments": 1043, "total_fragments": 1430, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003611035.1", "gtdb_species": "s__Cryobacterium soli", "ani": 86.0844, "matched_fragments": 1028, "total_fragments": 1430, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004210215.1", "gtdb_species": "s__Cryobacterium sp004210215", "ani": 85.9521, "matched_fragments": 854, "total_fragments": 1430, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002909375.1", "gtdb_species": "s__Cryobacterium zongtaii", "ani": 85.8945, "matched_fragments": 955, "total_fragments": 1430, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.98", "min_intra_species_ani": "96.32", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_004402695.1", "gtdb_species": "s__Cryobacterium sp004402695", "ani": 85.7957, "matched_fragments": 912, "total_fragments": 1430, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.309, "cell_length": 0.078, "doubling_h": null, "growth_tmp": 20.0, "optimum_tmp": 19.125, "optimum_ph": 7.25, "genome_size": 4351229.333, "gc_content": 68.379, "coding_genes": 3934.0, "rRNA16S_genes": 3.0, "tRNA_genes": 51.0, "gram_stain": 1.0, "sporulation": null, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Cryobacterium", "arcticum" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }