{ "type": "genome", "identifier": "GCF_003194585.1", "organism": "Nocardioides daejeonensis", "title": "Nocardioides daejeonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Center for Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003194585.1", "bioproject": "PRJNA224116", "biosample": "SAMN09270315", "wgs_master": "QHKZ00000000.1", "refseq_category": "reference genome", "taxid": "1046556", "species_taxid": "1046556", "organism_name": "Nocardioides daejeonensis", "infraspecific_name": "strain=MJ31", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/06", "asm_name": "ASM319458v1", "asm_submitter": "Chinese Center for Disease Control and Prevention", "gbrs_paired_asm": "GCA_003194585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/194/585/GCF_003194585.1_ASM319458v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4402093", "genome_size_ungapped": "4402093", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003194585.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4213", "protein_coding_gene_count": "4135", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-06", "dateModified": "2018-06-06", "datePublished": "2018-06-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides daejeonensis" ], "sample_taxid": [ "1046556" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.184 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4402093", "Number of Sequences": "19", "Longest Sequences (bp)": "970677", "N50 (bp)": "648957", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.6", "Number of CDSs": "4169", "Average Protein Length": "326.7", "Coding Ratio (%)": "92.8", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides daejeonensis", "strain": "strain=MJ31", "accession": "GCA_003194585.1", "taxid": 1046556, "species_taxid": 1046556, 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79.7057, "matched_fragments": 543, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides terrigena", "strain": "strain=KCTC 19217", "accession": "GCA_003047265.1", "taxid": 424797, "species_taxid": 424797, "relation_to_type": "type", "validated": true, "ani": 79.6882, "matched_fragments": 532, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides flavus Wang et al. 2016", "strain": "strain=CGMCC 1.12791", "accession": "GCA_014653115.1", "taxid": 2058780, "species_taxid": 2058780, "relation_to_type": "type", "validated": true, "ani": 79.635, "matched_fragments": 542, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panaciterrulae", "strain": "strain=DSM 21350", "accession": "GCA_013409645.1", "taxid": 661492, "species_taxid": 661492, "relation_to_type": "type", "validated": true, "ani": 79.6253, "matched_fragments": 547, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides kribbensis", "strain": "strain=DSM 16314", "accession": "GCA_015070375.1", "taxid": 305517, "species_taxid": 305517, "relation_to_type": "type", "validated": true, "ani": 79.6191, "matched_fragments": 574, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=SC8A-24", "accession": "GCA_014266025.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 79.5959, "matched_fragments": 617, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=CGMCC 4.7183", "accession": "GCA_014646035.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 79.5878, "matched_fragments": 613, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides gansuensis", "strain": "strain=WSJ-1", "accession": "GCA_003076135.1", "taxid": 2138300, "species_taxid": 2138300, "relation_to_type": "type", "validated": true, "ani": 79.5329, "matched_fragments": 546, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ungokensis", "strain": "strain=LMG 28591", "accession": "GCA_013466985.1", "taxid": 1643322, "species_taxid": 1643322, "relation_to_type": "type", "validated": true, "ani": 79.5314, "matched_fragments": 567, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides soli", "strain": "strain=DSM 105498", "accession": "GCA_014191495.1", "taxid": 1036020, "species_taxid": 1036020, "relation_to_type": "type", "validated": true, "ani": 79.5162, "matched_fragments": 649, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides daphniae", "strain": "strain=CCM 7403", "accession": "GCA_014635145.1", "taxid": 402297, "species_taxid": 402297, "relation_to_type": "type", "validated": true, "ani": 79.5048, "matched_fragments": 539, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013466785.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 79.4642, "matched_fragments": 609, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides jishulii", "strain": "strain=dk3136", "accession": "GCA_006007965.1", "taxid": 2575440, "species_taxid": 2575440, "relation_to_type": "type", "validated": true, "ani": 79.4417, "matched_fragments": 498, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 79.3393, "matched_fragments": 558, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_013409225.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 79.3293, "matched_fragments": 635, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides sambongensis", "strain": "strain=KUDC 5002", "accession": "GCA_006494815.1", "taxid": 2589074, "species_taxid": 2589074, "relation_to_type": "type", "validated": true, "ani": 79.323, "matched_fragments": 569, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": 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