{ "tc_result": [ { "organism_name": "Gilliamella apicola", "strain": "strain=DSM 104097", "accession": "GCA_003201455.1", "taxid": 1196095, "species_taxid": 1196095, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 997, "total_fragments": 999, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gilliamella apicola", "strain": "strain=wkB1", "accession": "GCA_000599985.1", "taxid": 1196095, "species_taxid": 1196095, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9921, "matched_fragments": 997, "total_fragments": 999, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gilliamella apis", "strain": "strain=NO3", "accession": "GCA_002142155.1", "taxid": 1970738, "species_taxid": 1970738, "relation_to_type": "type", "validated": true, "ani": 81.3926, "matched_fragments": 498, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gilliamella bombicola", "strain": "strain=R-53248", "accession": "GCA_900094945.1", "taxid": 1798182, "species_taxid": 1798182, "relation_to_type": "type", "validated": true, "ani": 80.5469, "matched_fragments": 441, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gilliamella intestini", "strain": "strain=R-53144", "accession": "GCA_900094935.1", "taxid": 1798183, "species_taxid": 1798183, "relation_to_type": "type", "validated": true, "ani": 80.0819, "matched_fragments": 429, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frischella perrara", "strain": "strain=DSM 104328", "accession": "GCA_003182045.1", "taxid": 1267021, "species_taxid": 1267021, "relation_to_type": "type", "validated": true, "ani": 79.8039, "matched_fragments": 199, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frischella japonica", "strain": "strain=Ac13", "accession": "GCA_014489845.1", "taxid": 2741544, "species_taxid": 2741544, "relation_to_type": "type", "validated": true, "ani": 78.0222, "matched_fragments": 206, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000599985.1", "gtdb_species": "s__Gilliamella apicola", "ani": 99.9921, "matched_fragments": 997, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.05", "min_intra_species_ani": "97.62", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 21, "status": "conclusive" }, { "accession": "GCF_001693435.1", "gtdb_species": "s__Gilliamella apicola_N", "ani": 93.3497, "matched_fragments": 827, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.54", "min_intra_species_ani": "96.32", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 19, "status": "-" }, { "accession": "GCF_003202915.1", "gtdb_species": "s__Gilliamella apicola_Q", "ani": 81.8843, "matched_fragments": 571, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.60", "min_intra_species_ani": "95.60", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002142155.1", "gtdb_species": "s__Gilliamella apis", "ani": 81.3648, "matched_fragments": 500, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.52", "min_intra_species_ani": "97.64", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 26, "status": "-" }, { "accession": "GCF_003202775.1", "gtdb_species": "s__Gilliamella apis_A", "ani": 81.2685, "matched_fragments": 512, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "95.38", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_001693745.1", "gtdb_species": "s__Gilliamella apicola_E", "ani": 80.7211, "matched_fragments": 465, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.90", "min_intra_species_ani": "97.90", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900094945.1", "gtdb_species": "s__Gilliamella bombicola", "ani": 80.5553, "matched_fragments": 440, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.14", "min_intra_species_ani": "97.05", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_009795885.1", "gtdb_species": "s__Gilliamella sp009795885", "ani": 80.5096, "matched_fragments": 495, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001690525.1", "gtdb_species": "s__Gilliamella apicola_H", "ani": 80.4358, "matched_fragments": 449, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.50", "min_intra_species_ani": "95.50", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001693755.1", "gtdb_species": "s__Gilliamella apicola_F", "ani": 80.4008, "matched_fragments": 504, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.98", "min_intra_species_ani": "98.98", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001690495.1", "gtdb_species": "s__Gilliamella apicola_G", "ani": 80.33, "matched_fragments": 469, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.43", "min_intra_species_ani": "99.43", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009795805.1", "gtdb_species": "s__Gilliamella sp009795805", "ani": 80.312, "matched_fragments": 458, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "98.02", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.84", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001690275.1", "gtdb_species": "s__Gilliamella apicola_C", "ani": 80.2719, "matched_fragments": 449, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.79", "min_intra_species_ani": "96.31", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.82", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_009795845.1", "gtdb_species": "s__Gilliamella sp009795845", "ani": 80.0351, "matched_fragments": 435, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001690185.1", "gtdb_species": "s__Gilliamella apicola_I", "ani": 79.6746, "matched_fragments": 411, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001690195.1", "gtdb_species": "s__Gilliamella apicola_L", "ani": 79.5586, "matched_fragments": 465, "total_fragments": 999, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }