{ "type": "genome", "identifier": "GCF_003201455.1", "organism": "Gilliamella apicola", "title": "Gilliamella apicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003201455.1", "bioproject": "PRJNA224116", "biosample": "SAMN08769570", "wgs_master": "QICT00000000.1", "refseq_category": "na", "taxid": "1196095", "species_taxid": "1196095", "organism_name": "Gilliamella apicola", "infraspecific_name": "strain=DSM 104097", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/07", "asm_name": "ASM320145v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003201455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/201/455/GCF_003201455.1_ASM320145v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3077047", "genome_size_ungapped": "3074459", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "53", "contig_count": "53", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003201455.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "2786", "protein_coding_gene_count": "2698", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-07", "dateModified": "2018-06-07", "datePublished": "2018-06-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Gilliamella apicola" ], "sample_taxid": [ "1196095" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.858 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3077047", "Number of Sequences": "53", "Longest Sequences (bp)": "443072", "N50 (bp)": "124867", "Gap Ratio (%)": "0.084497", "GCcontent (%)": "33.5", "Number of CDSs": "2728", "Average Protein Length": "312.1", "Coding Ratio (%)": "83.0", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "8" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gilliamella apicola", "strain": "strain=DSM 104097", "accession": "GCA_003201455.1", "taxid": 1196095, "species_taxid": 1196095, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 997, "total_fragments": 999, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gilliamella apicola", "strain": "strain=wkB1", "accession": "GCA_000599985.1", "taxid": 1196095, "species_taxid": 1196095, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9921, "matched_fragments": 997, "total_fragments": 999, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gilliamella apis", "strain": "strain=NO3", "accession": "GCA_002142155.1", "taxid": 1970738, "species_taxid": 1970738, "relation_to_type": "type", "validated": true, "ani": 81.3926, "matched_fragments": 498, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gilliamella bombicola", "strain": "strain=R-53248", "accession": "GCA_900094945.1", "taxid": 1798182, "species_taxid": 1798182, "relation_to_type": "type", "validated": true, "ani": 80.5469, "matched_fragments": 441, "total_fragments": 999, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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