{
    "type": "genome",
    "identifier": "GCF_003201605.1",
    "organism": "Streptohalobacillus salinus",
    "title": "Streptohalobacillus salinus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003201605.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09064410",
        "wgs_master": "QJJR00000000.1",
        "refseq_category": "reference genome",
        "taxid": "621096",
        "species_taxid": "621096",
        "organism_name": "Streptohalobacillus salinus",
        "infraspecific_name": "strain=DSM 22440",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/06/07",
        "asm_name": "ASM320160v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_003201605.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/201/605/GCF_003201605.1_ASM320160v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2529324",
        "genome_size_ungapped": "2528916",
        "gc_percent": "39.500000",
        "replicon_count": "0",
        "scaffold_count": "37",
        "contig_count": "37",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003201605.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "2390",
        "protein_coding_gene_count": "2286",
        "non_coding_gene_count": "77",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-06-07",
    "dateModified": "2018-06-07",
    "datePublished": "2018-06-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptohalobacillus salinus"
        ],
        "sample_taxid": [
            "621096"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.720 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2529324",
        "Number of Sequences": "37",
        "Longest Sequences (bp)": "339036",
        "N50 (bp)": "160779",
        "Gap Ratio (%)": "0.016131",
        "GCcontent (%)": "39.4",
        "Number of CDSs": "2339",
        "Average Protein Length": "311.1",
        "Coding Ratio (%)": "86.3",
        "Number of rRNAs": "9",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptohalobacillus salinus",
                "strain": "strain=DSM 22440",
                "accession": "GCA_003201605.1",
                "taxid": 621096,
                "species_taxid": 621096,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 824,
                "total_fragments": 825,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halolactibacillus miurensis",
                "strain": "strain=DSM 17074",
                "accession": "GCA_900116255.1",
                "taxid": 306541,
                "species_taxid": 306541,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.91,
                "matched_fragments": 215,
                "total_fragments": 825,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halolactibacillus miurensis",
                "strain": "strain=NBRC 100873",
                "accession": "GCA_007990305.1",
                "taxid": 306541,
                "species_taxid": 306541,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8122,
                "matched_fragments": 212,
                "total_fragments": 825,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halolactibacillus halophilus",
                "strain": "strain=DSM 17073",
                "accession": "GCA_900115605.1",
                "taxid": 306540,
                "species_taxid": 306540,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6082,
                "matched_fragments": 189,
                "total_fragments": 825,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halolactibacillus halophilus",
                "strain": "strain=NBRC 100868",
                "accession": "GCA_007990285.1",
                "taxid": 306540,
                "species_taxid": 306540,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4964,
                "matched_fragments": 186,
                "total_fragments": 825,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amphibacillus marinus",
                "strain": "strain=CGMCC 1.10434",
                "accession": "GCA_900110345.1",
                "taxid": 872970,
                "species_taxid": 872970,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2465,
                "matched_fragments": 103,
                "total_fragments": 825,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pelagirhabdus alkalitolerans",
                "strain": "strain=S5",
                "accession": "GCA_900096905.1",
                "taxid": 1612202,
                "species_taxid": 1612202,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2317,
                "matched_fragments": 117,
                "total_fragments": 825,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraliobacillus salinarum",
                "strain": "strain=G6-18",
                "accession": "GCA_014083865.1",
                "taxid": 1158996,
                "species_taxid": 1158996,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.941,
                "matched_fragments": 77,
                "total_fragments": 825,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amphibacillus cookii",
                "strain": "strain=DSM 23721",
                "accession": "GCA_016908375.1",
                "taxid": 767787,
                "species_taxid": 767787,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8947,
                "matched_fragments": 106,
                "total_fragments": 825,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gracilibacillus lacisalsi",
                "strain": "strain=DSM 19029",
                "accession": "GCA_000377765.1",
                "taxid": 393087,
                "species_taxid": 393087,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3721,
                "matched_fragments": 55,
                "total_fragments": 825,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003201605.1",
                "gtdb_species": "s__Streptohalobacillus salinus",
                "ani": 100.0,
                "matched_fragments": 824,
                "total_fragments": 825,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Streptohalobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900116255.1",
                "gtdb_species": "s__Halolactibacillus miurensis",
                "ani": 78.91,
                "matched_fragments": 215,
                "total_fragments": 825,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Halolactibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.76",
                "min_intra_species_ani": "99.51",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900115605.1",
                "gtdb_species": "s__Halolactibacillus halophilus",
                "ani": 78.5997,
                "matched_fragments": 190,
                "total_fragments": 825,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Halolactibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900096905.1",
                "gtdb_species": "s__Pelagirhabdus alkalitolerans",
                "ani": 78.2649,
                "matched_fragments": 116,
                "total_fragments": 825,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Pelagirhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900110345.1",
                "gtdb_species": "s__Amphibacillus_D marinus",
                "ani": 78.2465,
                "matched_fragments": 103,
                "total_fragments": 825,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Amphibacillus_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014083865.1",
                "gtdb_species": "s__Paraliobacillus salinarum",
                "ani": 77.941,
                "matched_fragments": 77,
                "total_fragments": 825,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Paraliobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000306965.1",
                "gtdb_species": "s__Amphibacillus_C jilinensis",
                "ani": 77.9272,
                "matched_fragments": 110,
                "total_fragments": 825,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Amphibacillus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016908375.1",
                "gtdb_species": "s__Amphibacillus_C cookii",
                "ani": 77.8947,
                "matched_fragments": 106,
                "total_fragments": 825,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Amphibacillus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.698,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.5,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Streptohalobacillus",
        "salinus"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}