{ "type": "genome", "identifier": "GCF_003201875.1", "organism": "Hungatella effluvii", "title": "Hungatella effluvii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003201875.1", "bioproject": "PRJNA224116", "biosample": "SAMN09074768", "wgs_master": "QJKD00000000.1", "refseq_category": "reference genome", "taxid": "1096246", "species_taxid": "1096246", "organism_name": "Hungatella effluvii", "infraspecific_name": "strain=DSM 24995", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/07", "asm_name": "ASM320187v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003201875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/201/875/GCF_003201875.1_ASM320187v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6863335", "genome_size_ungapped": "6862411", "gc_percent": "49.000000", "replicon_count": "0", "scaffold_count": "49", "contig_count": "49", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003201875.1-RS_2024_06_17", "annotation_date": "2024-06-17", "total_gene_count": "5992", "protein_coding_gene_count": "5882", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-07", "dateModified": "2018-06-07", "datePublished": "2018-06-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Hungatella effluvii" ], "sample_taxid": [ "1096246" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.948 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6863335", "Number of Sequences": "49", "Longest Sequences (bp)": "768078", "N50 (bp)": "341410", "Gap Ratio (%)": "0.013463", "GCcontent (%)": "49.0", "Number of CDSs": "5977", "Average Protein Length": "341.6", "Coding Ratio (%)": "89.2", "Number of rRNAs": "0", "Number of tRNAs": "63", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hungatella effluvii", "strain": "strain=DSM 24995", "accession": "GCA_003201875.1", "taxid": 1096246, "species_taxid": 1096246, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2262, "total_fragments": 2265, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Hungatella hathewayi", "strain": "strain=DSM 13479", "accession": "GCA_025149285.1", "taxid": 154046, "species_taxid": 154046, "relation_to_type": "suspected-type", "validated": true, "ani": 87.1145, "matched_fragments": 1492, "total_fragments": 2265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hungatella hathewayi", "strain": "strain=DSM 13479", "accession": "GCA_000160095.1", "taxid": 154046, "species_taxid": 154046, "relation_to_type": "suspected-type", "validated": true, "ani": 86.925, "matched_fragments": 1331, "total_fragments": 2265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacrimispora aerotolerans", "strain": "strain=DSM 5434", "accession": "GCA_000687555.1", "taxid": 36832, "species_taxid": 36832, "relation_to_type": "type", "validated": true, "ani": 78.4966, "matched_fragments": 228, "total_fragments": 2265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacrimispora sphenoides", "strain": "strain=NCTC507", "accession": "GCA_900461315.1", "taxid": 29370, "species_taxid": 29370, "relation_to_type": "type", "validated": true, "ani": 78.2669, "matched_fragments": 293, "total_fragments": 2265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacrimispora sphenoides", "strain": "strain=ATCC 19403", "accession": "GCA_900105615.1", "taxid": 29370, "species_taxid": 29370, "relation_to_type": "type", "validated": true, "ani": 78.2198, "matched_fragments": 294, "total_fragments": 2265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacrimispora algidixylanolytica", "strain": "strain=SPL73", "accession": "GCA_003609635.1", "taxid": 94868, "species_taxid": 94868, "relation_to_type": "type", "validated": true, "ani": 77.9726, "matched_fragments": 178, "total_fragments": 2265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lachnoclostridium pacaense", "strain": "strain=Marseille-P3100", "accession": "GCA_900566185.1", "taxid": 1917870, "species_taxid": 1917870, "relation_to_type": "type", "validated": true, "ani": 77.3086, "matched_fragments": 81, "total_fragments": 2265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=ATCC 25537", "accession": "GCA_900113155.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "type", "validated": true, "ani": 77.3069, "matched_fragments": 176, "total_fragments": 2265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella massiliensis", "strain": "strain=AT11", "accession": "GCA_900243045.1", "taxid": 1720294, "species_taxid": 1720294, "relation_to_type": "type", "validated": true, "ani": 77.0909, "matched_fragments": 103, "total_fragments": 2265, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella porci", "strain": 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